Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,481,161 – 13,481,272 |
Length | 111 |
Max. P | 0.528344 |
Location | 13,481,161 – 13,481,272 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.68 |
Mean single sequence MFE | -43.98 |
Consensus MFE | -19.14 |
Energy contribution | -18.31 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.54 |
Mean z-score | -2.10 |
Structure conservation index | 0.44 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13481161 111 + 23771897 CACCCGUGGCACACCCACGCUGGUGAGUACGCA---GCGGAAGCAGCAGUCCAGCGAAGUGUUGCAAAAUCUGUUGAACGCCAAUCGAAAGAUUG---GUGGCGGAGGCACCACAAC .....((((.((((...((((((.....((((.---((....)).)).))))))))..))))(((....(((((....((((((((....)))))---)))))))).)))))))... ( -46.40) >DroPse_CAF1 21965 114 + 1 AACGCGCGGCACGCCCACACUGGUGACUGCCCA---GCGGAAGCAGCAGUCCAGUGAGGUGCUGCAGAACCUGCUGGGUGUCAACCGAAAGAUCGUAGGAGGCGGUGGCACCACCAC ...((((((((...((.((((((..(((((...---((....)).))))))))))).))))))))....(((((..(((....)))((....)))))))..))((((....)))).. ( -51.10) >DroEre_CAF1 19583 111 + 1 CACCCGCGGAACACCCACGCUGGUGAGUACGCA---GCGGAAACAGCAGUCCAGCGAGGUGUUGCAAAAUCUGUUGAACGCCAAUCGAAAGAUUG---GUGGUGGAGGCACCACAAC ...(((((.((((((..((((((((....))).---(((....).))....))))).)))))).).............((((((((....)))))---)))))))............ ( -44.20) >DroWil_CAF1 27295 114 + 1 GACUAGAGGGACACCCACUCUGGUGACGGCGCAGCAGCGUAAACAGCAAUCCAGUGAAGUUUUGCAGAAUCUUCUGAAUGCCAAUCGUAAGAUUG---GUGGCGGAGCAACAACAAC .(((((((((....)).)))))))....((((....)))).....((((..(......)..))))......(((((...(((((((....)))))---))..))))).......... ( -36.20) >DroAna_CAF1 19957 111 + 1 CACCCGAGGCACCCCCACGCUAGUUAGUGCUCA---ACGGAAGCAGCAGUCUAGCGAGGUGCUGCAGAACCUGCUGAACGCUAACCGCAAGAUUG---UCGGGGGAGGAGGUACCAC ...........(((((((....(((((((.(((---.(((..((((((.(((....))))))))).....))).))).)))))))(....)...)---).))))).((.....)).. ( -36.90) >DroPer_CAF1 25881 114 + 1 AACGCGCGGUACGCCCACACUGGUGACUGCCCA---GCGGAAGCAGCAGUCCAGUGAGGUGCUGCAGAACCUGCUGGGUGUCAACCGAAAGAUCGUAGGAGGCGGUGGCACCACCAC ...((((((((...((.((((((..(((((...---((....)).))))))))))).))))))))....(((((..(((....)))((....)))))))..))((((....)))).. ( -49.10) >consensus CACCCGCGGCACACCCACGCUGGUGACUGCGCA___GCGGAAGCAGCAGUCCAGCGAGGUGCUGCAGAACCUGCUGAACGCCAACCGAAAGAUUG___GUGGCGGAGGCACCACAAC .....(((((((.....((((((....(((...............)))..))))))..)))))))......((((...((((..................))))..))))....... (-19.14 = -18.31 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:03 2006