| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,355,094 – 1,355,194 |
| Length | 100 |
| Max. P | 0.903699 |
| Location | 1,355,094 – 1,355,194 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.08 |
| Mean single sequence MFE | -28.17 |
| Consensus MFE | -12.52 |
| Energy contribution | -13.11 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1355094 100 + 23771897 GACAAGUGCUACUUCUGGCCAACUUCUGGCCAGAACUUCUUGGCCAGCUAGC--UACUG-----GUUGGUUGGCUAUUCGAUUU----CCAUUGUCUC-UUUUCGAAUGGAA- ..((((......(((((((((.....)))))))))...))))((((((((((--.....-----))))))))))(((((((...----..........-...)))))))...- ( -37.69) >DroSec_CAF1 10582 84 + 1 GACAAGUGCUACUUCUGGCCAAC-------------UUCUUGGCCAGCUACU--GGCUG-----G----UUGGCUGUUCGAUUU----CCAUUGUCUCGUUUGCGAAUGGAA- ................(((((((-------------(....((((((...))--)))))-----)----)))))).......((----((((....(((....)))))))))- ( -25.50) >DroSim_CAF1 8498 99 + 1 GACAAGUGCUACUUCUGGCCAACUUCUGGGC--AACUUCUUGGACAGCUACU--GGCUG-----GUUGGUUGGCUGUUCGAUUU----CCAUUGUCUCGUUUUCGAAUGGAA- ..........((..(..((((((.((..((.--.....))..))((((....--.))))-----))))))..)..)).....((----((((....(((....)))))))))- ( -27.30) >DroEre_CAF1 6458 80 + 1 GACAAGUGCUACUUCUGGCC-------------AACUUCUUGGCCAGC------UACUG-----G----UUGGCUGUUCGAUUU----CCAUUGUCUUUUUUUCGAAUGGAA- (((.((((......((((((-------------((....)))))))).------)))).-----)----))..((((((((...----..............))))))))..- ( -20.93) >DroYak_CAF1 11733 92 + 1 GACAAGUGCUACUUCUGGCCAG--------C--AACUUCUUGGCCAGCUACAGCUACUG-----G----UUGGCUGUUCGAUUGUCUUUGAUUGUCUUC-GUUCGAAUGGAA- (((.((((((....((((((((--------.--......))))))))....))).))).-----)----))..((((((((.((..............)-).))))))))..- ( -25.84) >DroAna_CAF1 10426 97 + 1 GACAAGUGCUACUUCUGGCCAA--------C--AACUUCUUGGCCAGAAACU--GGCCGAGACAGUUGCUUCGUUGGGUGAUUU----CUUUUGUCUUUUAUAAAAAAAAAAA ((((((.......((..((.((--------(--((((((((((((((...))--)))))))).))))).)).))..))......----..))))))................. ( -31.76) >consensus GACAAGUGCUACUUCUGGCCAA________C__AACUUCUUGGCCAGCUACU__GACUG_____G____UUGGCUGUUCGAUUU____CCAUUGUCUCGUUUUCGAAUGGAA_ ..............((((((((.................))))))))..........................((((((((.....................))))))))... (-12.52 = -13.11 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:01 2006