Locus 4809

Sequence ID 3L_DroMel_CAF1
Location 13,459,394 – 13,459,495
Length 101
Max. P 0.896760
window7580

overview

Window 0

Location 13,459,394 – 13,459,495
Length 101
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.16
Mean single sequence MFE -35.00
Consensus MFE -24.41
Energy contribution -24.35
Covariance contribution -0.06
Combinations/Pair 1.18
Mean z-score -1.70
Structure conservation index 0.70
SVM decision value 0.99
SVM RNA-class probability 0.896760
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13459394 101 - 23771897
-------------CCAUUCAGGGCGAGGGCGCACCUGUUCUACGCAAGGGUACCUGCGCCAACCACAUACGUGAUGUGAGUAAUUUGCUGUCCGGCGCUCACCUUACCAUCAAU
-------------.......(((((((((((....)))))).))).(((((....(((((...(((((.....)))))(((.....)))....)))))..))))).))...... ( -30.70)
>DroVir_CAF1 39301 102 - 1
------------ACCUUGAAGGGCGAAGGCGCACCAGUGCUACGCAAGGGCACCUGCGCGAACCAUAUUCAUGACGUGGGUAAACUUCUCUCCGGUGCCCAUUUGACAAUCAAU
------------...((((..((((..(((((....))))).)))..(((((((.(.(.(((...(((((((...)))))))...))).).).)))))))......)..)))). ( -32.40)
>DroPse_CAF1 40627 112 - 1
GUUGC--UUUUUAUGUUGAAGGGUGAAGGCGCACCUGUGCUACGCAAGGGCACCUGCGCCAACCACAUACGAGACGUCAGUAAUCUUUUUUCGGGUGCCCACCUGACAAUCAAC
(((((--(....(((((...(.(((..((((((...(((((.(....)))))).))))))...)))...)..))))).))))))......((((((....))))))........ ( -35.30)
>DroEre_CAF1 25960 109 - 1
----AAAUUU-ACCAAUUUAGGGUGAGGGCGCACCUGUUCUACGCAAGGGCACCUGCGCCAACCACAUCCGCGAUGUGAGUAAUUUGCUUUCUGGCGCUCACCUUACCAUCAAU
----......-.......(((((((((((((((..((((((.....))))))..)))))).((((((((...)))))).)).....(((....))).)))))))))........ ( -39.30)
>DroYak_CAF1 25410 101 - 1
-------------CCAUUUAGGGCGAGGGCGCACCUGUGCUACGCAAGGGCACCUGCGCCAACCACAUCCGCGAUGUGAGUAAUUUGCUUUCCGGCGCUCACCUUACCAUCAAU
-------------.....(((((.(((((((((...(((((.(....)))))).)))))).((((((((...)))))).)).....(((....))).))).)))))........ ( -37.00)
>DroPer_CAF1 40672 112 - 1
GUUGC--UUUUUAUGUUGAAGGGUGAAGGCGCACCUGUGCUACGCAAGGGCACCUGCGCCAACCACAUACGAGACGUCAGUAAUCUUUUUUCGGGUGCCCACCUGACAAUCAAC
(((((--(....(((((...(.(((..((((((...(((((.(....)))))).))))))...)))...)..))))).))))))......((((((....))))))........ ( -35.30)
>consensus
____________ACCAUGAAGGGCGAAGGCGCACCUGUGCUACGCAAGGGCACCUGCGCCAACCACAUACGAGACGUGAGUAAUCUGCUUUCCGGCGCCCACCUGACAAUCAAU
....................(((((..((((((...(((((.(....)))))).)))))).(((((.........))).))..............))))).............. (-24.41 = -24.35 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:58 2006