| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,459,006 – 13,459,114 |
| Length | 108 |
| Max. P | 0.560823 |
| Location | 13,459,006 – 13,459,114 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.43 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -19.60 |
| Energy contribution | -20.18 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13459006 108 + 23771897 GAAG---GUCAAA-UUCCGAUGUUUUUGUUUACGUUUUGAUGGGUACGUGGGCCGGCUGGAGCUUGGUGGUGCUUAUGACCAACUUCUCCCGCUCCUUGUGCUCCUUCUCCU ((((---(((((.-....(((((........))))))))))(((((((.((..(((..((((.(((((.((....)).)))))))))..)))..)).))))))))))).... ( -35.30) >DroVir_CAF1 38913 108 + 1 GAAU---GUCAAU-AACAUGUUCGUAUAUUUACGUUUUAAUGGGCACAUGAGCCGGCUGUAGUUUAGUCGUGCUUAUGACCAGCUUUUCGCGCUCCUUAUGCUCCUUUUCUU ((((---((.(((-(((......)).)))).))))))(((.((((.(((((((((((((.....)))))).)))))))....((.....)))))).)))............. ( -27.80) >DroPse_CAF1 40240 107 + 1 UAUG---GU-AGC-UAAUGGUGGCUACAAUUACGUUUUGAUGGGCACAUGCGCUGGCUGGAGCUUGGUGGUGCUGAUGACUAGCUUCUCCCGCUCCUUGUGCUCCUUUUCUU ....---((-(((-((....)))))))..............(((((((.((....)).(((((..((.((.((((.....)))).)).)).))))).)))))))........ ( -34.60) >DroGri_CAF1 42949 112 + 1 AAACCAAAUCAAUAUUUAAAUAGAGAUAAUCACGUCUUGAUGGGCACAUGAGCCGGUUGCAGUUUGCUCGUGCUUAUGACCAGCUUUUCGCGUUCCUUAUGCUCCUUUUCUU ......................(((((......)))))((..(((.((((((((((..((.....))))).)))))))....)))..))((((.....)))).......... ( -21.80) >DroEre_CAF1 25572 108 + 1 GAAG---GUAAAA-CUCCUAUGUUUUUGUUUACGUUUUGAUGGGUACGUGGGCCGGCUGGAGCUUGGUGGUGCUUAUGACCAGCUUCUCCCGCUCCUUGUGCUCCUUCUCCU ((((---(.((((-(......)))))................((((((.((..(((..((((((.(((.((....)).)))))))))..)))..)).))))))))))).... ( -35.20) >DroPer_CAF1 40285 107 + 1 UAUG---GU-AGC-UAAUGGUGGCUACAAUUACGUUUUGAUGGGCACAUGCGCCGGCUGGAGCUUGGUGGUGCUGAUGACUAGCUUCUCCCGCUCCUUGUGCUCCUUUUCUU ....---((-(((-((....)))))))..............(((((((.((....)).(((((..((.((.((((.....)))).)).)).))))).)))))))........ ( -34.60) >consensus GAAG___GUCAAA_UACAGAUGGCUAUAAUUACGUUUUGAUGGGCACAUGAGCCGGCUGGAGCUUGGUGGUGCUUAUGACCAGCUUCUCCCGCUCCUUGUGCUCCUUUUCUU .........................................(((((((.((((.((..((((((.(((.((....)).))))))))).)).))))..)))))))........ (-19.60 = -20.18 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:57 2006