Locus 4805

Sequence ID 3L_DroMel_CAF1
Location 13,432,291 – 13,432,402
Length 111
Max. P 0.679813
window7572

overview

Window 2

Location 13,432,291 – 13,432,402
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.31
Mean single sequence MFE -37.25
Consensus MFE -29.71
Energy contribution -30.03
Covariance contribution 0.31
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.80
SVM decision value 0.30
SVM RNA-class probability 0.679813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13432291 111 + 23771897
AAUCGCUUGCGAAAUUGUUGUGUCAAGUGCAGCUGGUG-UGUCCAAACUCACUCUUCUUGGAUUCA-------GAAUUCUGGG-UGGAGGGCACAACAAUUAACCAGGAAGGAGAACCGG
.....((((...((((((((((((.........(((..-...)))......((((.((..((....-------....))..))-.))))))))))))))))...))))..((....)).. ( -32.20)
>DroSim_CAF1 31349 118 + 1
AAUCGCUUGCGAAAUUGUUGUGUCAAGUGCAGCCGGUG-UGUCCAAACUCACUCUCCUUGGAUUCAGAAUUCAGAAUUCUGGG-UGGAGGGCACAACAAUUAACCGGGAAGGAGAACCGG
..(((....)))((((((((((((.((((.((..((..-...))...))))))((((....(((((((((.....))))))))-)))))))))))))))))..((((.........)))) ( -39.50)
>DroEre_CAF1 30566 112 + 1
AAUCGCUUGCGAAAUUGUUGUGUCAAGUGCAGCCUGUGCUGUCCAAACUCACUC-CCUUAGAUUCG-------GGAUUUUGGGAUGGAGGGCACAACAAUUAACCGGGGAGGAGAACCGG
..(((....)))((((((((((((..(..((((....))))..)...(((..((-((..(((((..-------.))))).))))..)))))))))))))))..((((.........)))) ( -40.10)
>DroYak_CAF1 29823 110 + 1
AAUCGCUUGCGAAAUUGUUGUGUCAAGUGCAGCCGGUG-UGUCCAAACUCACUC-CCUUAGAUUCG-------GGAUUCCGGG-UGGAGGGCACAACAAUUAAACGGGGAGCAGAAACGG
....((((.(..((((((((((((...(.((.((((.(-((........)))((-((........)-------)))..)))).-)).).)))))))))))).....).))))........ ( -37.20)
>consensus
AAUCGCUUGCGAAAUUGUUGUGUCAAGUGCAGCCGGUG_UGUCCAAACUCACUC_CCUUAGAUUCA_______GAAUUCUGGG_UGGAGGGCACAACAAUUAACCGGGAAGGAGAACCGG
..(((....)))((((((((((((..(..((........))..)...(((.(...(((.((((((........)))))).)))..))))))))))))))))..((((.........)))) (-29.71 = -30.03 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:51 2006