Locus 4803

Sequence ID 3L_DroMel_CAF1
Location 13,431,203 – 13,431,323
Length 120
Max. P 0.643435
window7569

overview

Window 9

Location 13,431,203 – 13,431,323
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.53
Mean single sequence MFE -31.83
Consensus MFE -27.52
Energy contribution -27.46
Covariance contribution -0.06
Combinations/Pair 1.10
Mean z-score -1.49
Structure conservation index 0.86
SVM decision value 0.23
SVM RNA-class probability 0.643435
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13431203 120 + 23771897
GAAAUUAGUAGUAUUCGUCUGAGGCAUUCCUUAAGAGCUCGAUAAGAUAACGAUUAGGAGUCUCAUUUUAUGACGUCUGAUAAGCGAUCGAUGGUCAUCUACGAUCACUGAUGGAUUGUU
..((((..((((..((((.(((((....))))).((.((((((.........(((((..(((.........)))..))))).....))))).).))....))))..))))...))))... ( -25.94)
>DroSim_CAF1 30245 120 + 1
GAAAUUAGUAGUAUUCGUCUGAGGCAUUCCUUAAAAGCUCGAUAAGAUAACGAUUAGGAGUCUCAUUUUAUGACGUUUGAUAAGCGAUCGAUGGUCAUCUACGAUCGCUGAUGGAUUGUU
............(((((((((((((..((((.......((.....))........)))))))))).................((((((((.(((....)))))))))))))))))).... ( -29.76)
>DroEre_CAF1 29414 119 + 1
GAAUU-AGAAGCAUUCGUCUGAGACAUUCCUUAAAAGCUCGAUAAGAUUGCGAUUAGGAGUCUCAUUUUAUGACGUUUGAUAAGCGAUCGGUGGUCAUCCACGAUCGCUGAUGGAUUGUU
.....-...((((((((((((((((..((((.....((((.....))..))....)))))))))).................((((((((.(((....))))))))))))))))).)))) ( -36.50)
>DroYak_CAF1 28619 120 + 1
GAAUAGAGAAGCAUUCGUCUGCGGCAUUCCUUAAAAGCUCGAUAAGAUUACGAUUAGGAGUCUCAUUUUAUGACAUUUGAUAAGCGAUCAAUGGUCAUCCAUGAUCGCUGAUCGAUUGUU
.....((((..(..((((((.((((...........)).))...)))...)))....)..)))).......((((.(((((.((((((((.(((....))))))))))).))))).)))) ( -35.10)
>consensus
GAAAUUAGAAGCAUUCGUCUGAGGCAUUCCUUAAAAGCUCGAUAAGAUAACGAUUAGGAGUCUCAUUUUAUGACGUUUGAUAAGCGAUCGAUGGUCAUCCACGAUCGCUGAUGGAUUGUU
............(((((((((((((..((((.......((.....))........)))))))))).................((((((((.(((....)))))))))))))))))).... (-27.52 = -27.46 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:48 2006