Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,430,498 – 13,430,618 |
Length | 120 |
Max. P | 0.997071 |
Location | 13,430,498 – 13,430,618 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -44.96 |
Consensus MFE | -42.16 |
Energy contribution | -42.48 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.84 |
Structure conservation index | 0.94 |
SVM decision value | 2.79 |
SVM RNA-class probability | 0.997071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13430498 120 - 23771897 AGAUUACAGCUCUUGAUCCUUCCUCUGGCGCGGAACUAGACCACAAGCUGUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC ........(((((..(((((((((((((((((.((((...(((((((((......(((....))).))))))))).)))).)))........))))))))).))))...)..)))))... ( -48.80) >DroSec_CAF1 27665 120 - 1 AGAUUACAGCUCUUGACCCUUCCUCUGGAGCGGAACUAGACCAUAAGCUGUCCCAAGCCGAUGCUGAGUUUGUAGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC ........(((((..(((((((((((((.(((((..(((..(((..(((......)))..))))))..))))).....((((....))))...)))))))).))))...)..)))))... ( -40.80) >DroSim_CAF1 29533 120 - 1 AGAUUACAGCUCUUGACCCUUCCUCUGGAGCGGAACUAGACCACAAGCUGUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC ........(((((..(((((((((((((.(((.((((...(((((((((......(((....))).))))))))).)))).))).((....)))))))))).))))...)..)))))... ( -48.50) >DroEre_CAF1 28699 120 - 1 AGAUUACAGCCCUUGAUCCUUCCUCCGGCGAAGAACUGGACCACAAGCUAUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGCGGAGAGGGCACUUGGGAGCGAC ........(((((((.(((((((.((((((...((((...(((((((((......(((....))).))))))))).))))((....))...)))))).))).))))))...))).))... ( -41.90) >DroYak_CAF1 27913 120 - 1 AGAUAACAGCCCUUGAUCCUUCCUCUGGCAAAGAUCUAGACCACAAGCUAUCCCAGGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCAAC ........(((((((.((((((((((((((..........(((((((((......(((....))).)))))))))...((((....)))).)))))))))).))))))...))).))... ( -44.80) >consensus AGAUUACAGCUCUUGAUCCUUCCUCUGGCGCGGAACUAGACCACAAGCUGUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC ........(((((..(((((((((((((((..........(((((((((......(((....))).)))))))))...((((....)))).)))))))))).))))...)..)))))... (-42.16 = -42.48 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:45 2006