Locus 48

Sequence ID 3L_DroMel_CAF1
Location 175,754 – 175,865
Length 111
Max. P 0.971420
window65

overview

Window 5

Location 175,754 – 175,865
Length 111
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 97.90
Mean single sequence MFE -35.20
Consensus MFE -34.89
Energy contribution -34.67
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.44
Structure conservation index 0.99
SVM decision value 1.67
SVM RNA-class probability 0.971420
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 175754 111 + 23771897
GAUUGUUCAUUGUUGCGUUGGUGGGUGUAGCAUUUGGAGUGUUGGUGAGACUGUUUGCAUAGCUUCCACUGUUGGCUGUCAUAGGAGAAUCCUUGAUAGUCAAUGAUGCAA
............(((((((((((((.((.(((...(.(((.((...)).))).).)))...)).))))))(((((((((((.(((.....))))))))))))))))))))) ( -35.40)
>DroSec_CAF1 9460 111 + 1
GAUUGUUAAUUGUUGCGUUGGUGGGUGUAGCAUUUGGAGUGUUGGUGAGACUGUUUGCAUAGCUUCCACUGUUGGCUGUCAUAGGCGAAUCCUUGAUAGUCAAUGAUGCAA
............(((((((((((((.((.(((...(.(((.((...)).))).).)))...)).))))))(((((((((((.(((.....))))))))))))))))))))) ( -33.80)
>DroYak_CAF1 9675 111 + 1
GAUUGUUCAUUGUUGCGUUGGUGGGUGUAGCAUUUGGAGUGCUGGUGAGACUGUUUGCAUAGCUUCCACUGUUGGCUGUCAUAGGUGAAUCCUUGAUAGUCAAUGAUGCAA
............(((((((((((((.(((((((.....))))).(..((....))..)...)).))))))(((((((((((.(((.....))))))))))))))))))))) ( -36.40)
>consensus
GAUUGUUCAUUGUUGCGUUGGUGGGUGUAGCAUUUGGAGUGUUGGUGAGACUGUUUGCAUAGCUUCCACUGUUGGCUGUCAUAGGAGAAUCCUUGAUAGUCAAUGAUGCAA
............(((((((((((((.(((((((.....))))).(..((....))..)...)).))))))(((((((((((.(((.....))))))))))))))))))))) (-34.89 = -34.67 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:55 2006