Locus 4797

Sequence ID 3L_DroMel_CAF1
Location 13,429,015 – 13,429,135
Length 120
Max. P 0.514103
window7553

overview

Window 3

Location 13,429,015 – 13,429,135
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -37.20
Consensus MFE -33.90
Energy contribution -33.98
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.19
Structure conservation index 0.91
SVM decision value -0.04
SVM RNA-class probability 0.514103
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13429015 120 - 23771897
GCUACUUCCUUGAACCGGAACCGAAGUUUGUGGCGAAACCAAUUUGCUGCGUGCCCGGUGCAAGUUUACUGGGCCAAUCCUCUCGAGCAACCCCCUCACGUUGCCUUUGCACGGAUUUCA
.....((((.......))))..(((((((((((((((.....))))))(((.((((((((......)))))))))...........(((((........)))))....))))))))))). ( -35.10)
>DroSec_CAF1 26138 120 - 1
GCUACUUCCUUGAACCGGAACCGAAGUUUGUGGCGAAACCAAUUUGCUGCGUGCCCGGUGCAAGUUUACUGGGCCAAUCCUCUCGAGCAACCCCCUCACGUAGCCUUCGCACGGAUUUCA
.....((((.......))))..((((((((((.((((........(((((((((((((((......))))))))..........(((.......)))))))))).)))))))))))))). ( -39.30)
>DroSim_CAF1 28006 120 - 1
GCUACUUCCUUGAACCGGAACCGAAGUUUGUGGCGAAACCAAUUUGCUGCGUGCCCGGUGCAAGUUUACUGGGCCAAUCCUCUCGAGCAACCCCCUCACGUAGCCUUCGCACGGAUUUCA
.....((((.......))))..((((((((((.((((........(((((((((((((((......))))))))..........(((.......)))))))))).)))))))))))))). ( -39.30)
>DroEre_CAF1 27167 120 - 1
GCUACUUCCUUGAACCGGAACCGAAGUUUGUGGCGAAACCAAUUUGCUGCGUGCCCGGUGCAAGUUUACUGGGCCAAUCCUCUCAAGCAACCCCCGCACGUAGCCUUCGCACGGAUUUCA
.....((((.......))))..((((((((((.((((........(((((((((((((((......))))))))............((.......))))))))).)))))))))))))). ( -38.90)
>DroYak_CAF1 26395 120 - 1
GCCACUUCCUUGAACCGGAACCGAAGUUUGUGGCGAAACCAAUUUGCUGCGUGCCCGGUGCAAGUUUACUGGGCCAAUCCUCUCAAGCAACCCCCGCACGUAGUCUUCGCACGGAUUCCA
(((((...(((....((....)))))...)))))(((.((.....(((((((((((((((......))))))))............((.......)))))))))........)).))).. ( -33.42)
>consensus
GCUACUUCCUUGAACCGGAACCGAAGUUUGUGGCGAAACCAAUUUGCUGCGUGCCCGGUGCAAGUUUACUGGGCCAAUCCUCUCGAGCAACCCCCUCACGUAGCCUUCGCACGGAUUUCA
.....((((.......))))..((((((((((.((((........(((((((((((((((......)))))))).....((....))..........))))))).)))))))))))))). (-33.90 = -33.98 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:32 2006