Locus 4795

Sequence ID 3L_DroMel_CAF1
Location 13,427,752 – 13,427,861
Length 109
Max. P 0.723359
window7550

overview

Window 0

Location 13,427,752 – 13,427,861
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 87.76
Mean single sequence MFE -29.53
Consensus MFE -18.91
Energy contribution -19.60
Covariance contribution 0.69
Combinations/Pair 1.09
Mean z-score -2.57
Structure conservation index 0.64
SVM decision value 0.41
SVM RNA-class probability 0.723359
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13427752 109 + 23771897
AUUAACAUAGCCAUAAAGAGGCGCAAAAUUCGCCAGGGGGCAGGAGAUGGAGCACCUUAACAACACGCGUGUUGGGCCCCCACCAAAGUAAAAAAAAAGGAACUUUAAU
.............(((((.((((.......)))).(((((((((.(......).)))...(((((....))))).)))))).....................))))).. ( -29.80)
>DroSim_CAF1 26688 104 + 1
AUUAACAUAGCCAUAAAGAGG--CAAAAUUCGCCGGGGGGCAGGAGAGGGAGCACCUUAACAACACGCGUGUUGGGCCCCCAACCAA---AAAAAAAAGGAACUUUAAU
.............(((((.((--(.......))).((((((....((((.....))))..(((((....))))).))))))......---............))))).. ( -31.40)
>DroEre_CAF1 25955 102 + 1
AUUAACAUAGCCAUAAAGAGG--CGAAAUUCGCCAGGGGGCAGAAGACGGAGCACCUUAACAACACGCGUGCUGGGUCCCCUCCAA-----AAAAAAAGGAACUUUAAU
.............(((((.((--((.....)))).(((((.....(((..((((((..........).)))))..))).)))))..-----...........))))).. ( -26.10)
>DroYak_CAF1 25122 102 + 1
AUUAACAUAGCCAUAAAGAGG--CGAAUUUCGCCAGGGGCCAGCAGAGGCAGCACCUUAACAACACGCGUGUUGGGUUCCCCACCC-----AAAAAAAGGGACUUUAAU
.............(((((.((--((.....)))).((((((....((((.....))))..(((((....)))))))..)))).(((-----.......))).))))).. ( -30.80)
>consensus
AUUAACAUAGCCAUAAAGAGG__CAAAAUUCGCCAGGGGGCAGGAGAGGGAGCACCUUAACAACACGCGUGUUGGGCCCCCAACAA_____AAAAAAAGGAACUUUAAU
.............(((((.((...........)).((((((....((((.....))))..(((((....))))).)))))).....................))))).. (-18.91 = -19.60 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:29 2006