| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,427,171 – 13,427,291 |
| Length | 120 |
| Max. P | 0.866447 |
| Location | 13,427,171 – 13,427,291 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.37 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -19.83 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13427171 120 + 23771897 AAACGGGGCCAAGAGAUUAUGCGUGCUGUGGAGAGGAUGUCCCUCGACGGAACGCAAAUUACCCGCAAAAUUGCUCCUUCAUCUAUUUACAUACAUGAGUAUGUAUGUAUGUAAGUAUCC ....(((((..........(((((.((((.(((.((....))))).)))).)))))((((........)))))))))......((((((((((((((......))))))))))))))... ( -40.10) >DroEre_CAF1 25417 101 + 1 AAACGGGGCCAAGAGAUUAUGCGUGAUGUUG--AGGAUGUCCCUCGACGGCACGCAAAUUACCCGCAAAAUUGCUCCUUCAUCUAUUUACAUAUACUCGUAUA----------------- ..(((((.......((((.((((((.(((((--(((.....)))))))).))))))))))....(((....))).....................)))))...----------------- ( -29.60) >DroYak_CAF1 24550 106 + 1 AAACGGGGCCAAGAGAUUAUGCGUGCUGUUG--AGGAUGUCCCUCGACGGAACGCAAAUUACCCGCAAAAUUGCUCCUUCAUUUAUUUACAUACAUAUAUAUA------------CAUCC ....(((((..........(((((.((((((--(((.....))))))))).)))))((((........)))))))))..........................------------..... ( -28.00) >consensus AAACGGGGCCAAGAGAUUAUGCGUGCUGUUG__AGGAUGUCCCUCGACGGAACGCAAAUUACCCGCAAAAUUGCUCCUUCAUCUAUUUACAUACAUAAGUAUA_____________AUCC ....(((((..........(((((.((((((..(((.....))))))))).)))))((((........)))))))))........................................... (-19.83 = -20.50 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:28 2006