Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,352,653 – 1,352,743 |
Length | 90 |
Max. P | 0.849447 |
Location | 1,352,653 – 1,352,743 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.15 |
Mean single sequence MFE | -19.33 |
Consensus MFE | -9.80 |
Energy contribution | -10.13 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.51 |
Structure conservation index | 0.51 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1352653 90 + 23771897 CGAGCUACCUUCUUCAUAUUAACUAUCUAGUAAUGUGGAAGAAACUUUAAUCUU------------------------AGUUUUAGUUAUUUUAUAGUAACUAGCUUGCAUUUA ((((((......(((((((((.((....))))))))))).((((((........------------------------))))))(((((((....)))))))))))))...... ( -19.70) >DroSec_CAF1 8149 110 + 1 CAAGCUACCUUCUUCAUAUUAACUAUCCAGUAAUUUGGAUGAAACUCCCAUCUUAAAGUAAUUAGUUUUAGUUAGUAUAAUUUUAGUUAUAUCAUAGUAACUAG----CACCUA ...((..........(((((((((((((((....))))))((((((.....(.....).....))))))))))))))).....(((((((......))))))))----)..... ( -20.90) >DroSim_CAF1 6101 110 + 1 CAAGCUACCUUCUUCAUAUUAACUAUCUAGUAAUUAGGAAGAAACUCCCAUCUUAAAGUAAUUAGUUAUAGUUAUUAUAAUUUUAGUUAUAUCAUAGUAACUAG----CACUUA ...((..........(((.((((((((((((.(((...((((........))))..))).)))))..))))))).))).....(((((((......))))))))----)..... ( -17.40) >consensus CAAGCUACCUUCUUCAUAUUAACUAUCUAGUAAUUUGGAAGAAACUCCCAUCUUAAAGUAAUUAGUU_UAGUUA_UAUAAUUUUAGUUAUAUCAUAGUAACUAG____CACUUA .........((((((..((((.((....))))))...))))))........................................(((((((......)))))))........... ( -9.80 = -10.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:58 2006