Locus 4789

Sequence ID 3L_DroMel_CAF1
Location 13,425,155 – 13,425,275
Length 120
Max. P 0.500000
window7541

overview

Window 1

Location 13,425,155 – 13,425,275
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -32.88
Consensus MFE -31.70
Energy contribution -31.86
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.10
Structure conservation index 0.96
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13425155 120 - 23771897
CCGCUGCAAAACUAGAUAUUCUCCGUCAUUUGCGAUUCCUGCAUUAAUGAAGCACUCGCUGUGCGGCGCGCGAAUGUGCGAUAAUUUAUUAGUGCCACAUUUGCGACACAGAUUUCGAUU
.(((((((.................(((((((((.....))))..)))))(((....))).)))))))((((((((((((.(((....))).)).))))))))))............... ( -32.70)
>DroSec_CAF1 22198 120 - 1
CCGCUGCAAAACUAGAUAUUCUCCGUCAUUUGCGAUUCCUGCAUUAAUGAAGCACUCGCGUUGCGGCGCGCGAAUGUGCGAUAAUUUAUUAGUGCCACAUUUGCGACACAGAUUUCGAUU
.((((((((................(((((((((.....))))..))))).((....)).))))))))((((((((((((.(((....))).)).))))))))))............... ( -32.90)
>DroSim_CAF1 23956 120 - 1
CCGCUGCAAAACUAGAUAUUCUCCGUCAUUUGCGAUUCCUGCAUUAAUGAAGCACUCGCGUUGCGGCGCGCGAAUGUGCGAUAAUUUAUUAGUGCCACAUUUGCGACACAGAUUUCGAUU
.((((((((................(((((((((.....))))..))))).((....)).))))))))((((((((((((.(((....))).)).))))))))))............... ( -32.90)
>DroEre_CAF1 23261 120 - 1
CCGCUGCAAAACUAGAUAUUCUCCUUCAUUCGCGAUUCCCGCAUUAAUGAAGCACUCGCGGUGCGGCGCGCGAAUGUGCGAUAAUUUAUUAGUGCCACAUUUGCGACACAGAUUUCGAUU
.(((((((................((((((.(((.....)))...))))))((....))..)))))))((((((((((((.(((....))).)).))))))))))............... ( -33.10)
>DroYak_CAF1 22310 120 - 1
CCGCUGCAAAACUAGAUAUUCUCCGUCAUUCGCGAUUCCCGCAUUAAUGAAGCACUCGCGGUGCGGCGCGCGAAUGUGCGAUAAUUUAUUAGUGCCACAUUUGCGACACAGAUUUCGAUU
.(((((((......(((.......)))..((((((......((....))......)))))))))))))((((((((((((.(((....))).)).))))))))))............... ( -32.80)
>consensus
CCGCUGCAAAACUAGAUAUUCUCCGUCAUUUGCGAUUCCUGCAUUAAUGAAGCACUCGCGGUGCGGCGCGCGAAUGUGCGAUAAUUUAUUAGUGCCACAUUUGCGACACAGAUUUCGAUU
.(((((((.................(((((((((.....))))..))))).((....))..)))))))((((((((((((.(((....))).)).))))))))))............... (-31.70 = -31.86 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:20 2006