Locus 4787

Sequence ID 3L_DroMel_CAF1
Location 13,419,206 – 13,419,326
Length 120
Max. P 0.790109
window7539

overview

Window 9

Location 13,419,206 – 13,419,326
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -45.15
Consensus MFE -27.65
Energy contribution -28.47
Covariance contribution 0.81
Combinations/Pair 1.47
Mean z-score -2.01
Structure conservation index 0.61
SVM decision value 0.58
SVM RNA-class probability 0.790109
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13419206 120 - 23771897
UGCUUCUUUUAAGUGCAUCAUCGCCCAUUUGAACAGCGGCGGCCGCCUGUUGUUUGCGUCGCUCAAUCUCUGCCUUCAGGGCUAGGAUACGGUCACGCUCCUUUUGCAAGCUUGCUGCUU
.(((...((((((((..........)))))))).)))((((((.((.(((.....((((.(((..((((..(((.....)))..))))..))).)))).......))).))..)))))). ( -34.80)
>DroPse_CAF1 16166 120 - 1
UGCUUCUCUUCAGCGCCUCCUCGCCCAUCUGGACGGCGGCGGCCGCCUGCUGCUUGCGUCGCUCGAUCUCCGCCUUCAAGGCCAAGAUACGGUCGCGUUCCUUUUGCAGGCUGGCUGCCU
.(((.......)))((((((..........))).)))(((((((((((((.....((((.((.((((((..(((.....)))..)))).)))).)))).......)))))).))))))). ( -53.20)
>DroEre_CAF1 17384 120 - 1
UAUUUCUUUUAAGUGCAUCCUCGCCCAUUUGAACGGCCGCUGCCGCCUGCUGCUUGCGGCGCUCGAUCUCUGCCUUCAGGGCGAGGAUACGGUCCCGCUCCUUUUGCAAGGUGGCUGCUU
................((((((((((...((((.(((.((.(((((.........)))))))..(....).))))))))))))))))).(((((((((.......))..)).)))))... ( -43.40)
>DroWil_CAF1 18883 120 - 1
UGCUUCGUUUAAGUGCUUCUUCUCCCAACUGGACAGCAGCUGCUGCCUGAAGCUUUCGUCUCUCGAUCUCUGCCUUGAGGGAGAGUAUUCUAUCGCGCUCCUUCUGCAGUGAGGCAGCCU
(((((((.......(((((...........((.((((....)))))).)))))..(((.....)))...((((...(((((((.((........)).))))))).))))))))))).... ( -37.50)
>DroAna_CAF1 20101 120 - 1
UGUUUCGCUUUAGGGCCUCUUCGCCCAUGAGAACUGCGGCGGCAGCUUGCUGCUUGCGGCGUUCGAUUUCUGCUUUGAGAGCGAGAAUCCGGUCGCGCUCCUUUUGCAGGCUGGCUGCCU
.((....(((..((((......))))..)))....))(((((((((((((.....(((.((..((..((((((((...)))).))))..))..))))).......))))))).)))))). ( -48.80)
>DroPer_CAF1 16247 120 - 1
UGCUUCUCUUCAGCGCCUCCUCGCCCAUCUGGACGGCGGCGGCCGCCUGCUGCUUGCGUCGCUCGAUCUCCGCCUUCAAGGCCAAGAUACGGUCGCGUUCCUUUUGCAGGCUGGCUGCCU
.(((.......)))((((((..........))).)))(((((((((((((.....((((.((.((((((..(((.....)))..)))).)))).)))).......)))))).))))))). ( -53.20)
>consensus
UGCUUCUCUUAAGUGCCUCCUCGCCCAUCUGAACGGCGGCGGCCGCCUGCUGCUUGCGUCGCUCGAUCUCUGCCUUCAGGGCGAGGAUACGGUCGCGCUCCUUUUGCAGGCUGGCUGCCU
.(((((......(((......)))......))..)))(((((((((((((.....((((.(((..((((..((((...))))..))))..))).)))).......)))))).))))))). (-27.65 = -28.47 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:17 2006