| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,409,933 – 13,410,039 |
| Length | 106 |
| Max. P | 0.588400 |
| Location | 13,409,933 – 13,410,039 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.81 |
| Mean single sequence MFE | -30.77 |
| Consensus MFE | -17.89 |
| Energy contribution | -18.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13409933 106 + 23771897 AAGAAGUGAGUUCCCAUAAGGGGACACUUAAUGUCAGCACGACGCAGAGGGGUUCGGGAAUAUGGCAGAAUAUUCCU-GGCUACAGCAUCAAUCUAGAGAUAUUUA-----G .........((((((....)))))).((.((((((.((.....))(((..(((.(((((((((......))))))))-)((....)))))..)))...)))))).)-----) ( -31.10) >DroGri_CAF1 7953 109 + 1 UAAAAGUGAACUCCAUGAGCUGGACAGAUGAUAUCAGCGCGUCGAGGCGGUGAACGCGAAUAGGGCUGAAUGUUGCGCUGCUGGGGCGUCAUCUGACA--UGUUCAGAAGA- ......(((((((((.....))))((((((((.(((((((((....(((.....)))......(((.....))))))).)))))...))))))))...--.))))).....- ( -35.00) >DroSec_CAF1 6903 106 + 1 AAAAAGUGAGUUCCCAUAGGGGGACACUUAAUGUCAGCACGACGCAGAGGGGUUCGGGAAUACGGCAGAAUAUUCCU-GGCUGCAGCAUCAAUCUAGAUAAAUUUG-----G ...((((..((((((....))))))))))..((((.((.....))(((..(((.((((((((........)))))))-)((....)))))..))).))))......-----. ( -26.70) >DroSim_CAF1 8616 106 + 1 AAAAAGUGAGUUCCCAUAAGGGGACACUUAAUGUCAGCACGACGCAGAGGGGUUCGGGAAUAAGGCAGAAUAUUCCU-GGCUGCAGCAUCAAUCUAGAUAAAUUUG-----G ...((((..((((((....))))))))))..((((.((.....))(((..(((.((((((((........)))))))-)((....)))))..))).))))......-----. ( -27.00) >DroEre_CAF1 6727 106 + 1 AAAAAGUGAGUUCCCAUUAGGGGACACUUAAUGUCGGCACGACGCAAAGGGGUUCGGGAAUAUGGCAGAAUAUUCCU-GGCUGCAGCAUUAAUCUGGAAAUAUUAA-----G .........((((((....))))))..(((((((((((..(((.(....).)))(((((((((......))))))))-)))))..)))))))..............-----. ( -31.00) >DroYak_CAF1 7076 106 + 1 AAAAAGUGAGUUCCCAUUAGGGGACACUUAAUGUCAGCACGACGCAAAGGGGUUCGGGAAUAUGGCAGAAUAUUCCU-GGCUGCAGAAUUAAUCUGGAAAUAUUAA-----G .........((((((....)))))).((((((((((((..(((.(....).)))(((((((((......))))))))-)))))((((.....))))...)))))))-----) ( -33.80) >consensus AAAAAGUGAGUUCCCAUAAGGGGACACUUAAUGUCAGCACGACGCAGAGGGGUUCGGGAAUAUGGCAGAAUAUUCCU_GGCUGCAGCAUCAAUCUAGAAAUAUUUA_____G ...(((((...((((.....)))))))))..((.((((.((((.(....).).)))((((((........))))))...))))))........................... (-17.89 = -18.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:14 2006