Locus 4784

Sequence ID 3L_DroMel_CAF1
Location 13,407,581 – 13,407,683
Length 102
Max. P 0.559339
window7535

overview

Window 5

Location 13,407,581 – 13,407,683
Length 102
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 84.67
Mean single sequence MFE -36.20
Consensus MFE -31.90
Energy contribution -31.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.88
SVM decision value 0.05
SVM RNA-class probability 0.559339
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13407581 102 + 23771897
--------------AUU-UUUUCACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGUUGAAUAUAGUCCGUC
--------------...-..((((.((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).))))........... ( -35.80)
>DroPse_CAF1 4850 113 + 1
AUUAA----AAAAAGUUAGUUUCAUCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAACGUCGUGCGGC
.....----...........((((.((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).))))((.....)).. ( -36.50)
>DroSim_CAF1 6284 106 + 1
---AA---AAAAAAG-----UCAACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAGCAUAGUUCGUC
---..---.......-----.....((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))))..((((...))))... ( -33.40)
>DroYak_CAF1 4646 116 + 1
AAAAAGUACAAAAAAGU-AUUCAGCCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGUUGAGCUGAGCGCGUC
...............(.-.((((((((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))))....))))))..)... ( -41.40)
>DroAna_CAF1 4643 111 + 1
AGAA-----AAAAAAUU-AAUCAUCCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAAAGCCGUGCGCC
....-----........-..(((..((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).)))............ ( -33.60)
>DroPer_CAF1 4901 113 + 1
AUUAA----AAAAAGUUAGUUUCAUCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAACGUCGUGCGGC
.....----...........((((.((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).))))((.....)).. ( -36.50)
>consensus
A__AA____AAAAAAUU_AUUCAACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAACGUAGUGCGUC
.........................((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))))................ (-31.90 = -31.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:13 2006