Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,407,581 – 13,407,683 |
Length | 102 |
Max. P | 0.559339 |
Location | 13,407,581 – 13,407,683 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 84.67 |
Mean single sequence MFE | -36.20 |
Consensus MFE | -31.90 |
Energy contribution | -31.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.88 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13407581 102 + 23771897 --------------AUU-UUUUCACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGUUGAAUAUAGUCCGUC --------------...-..((((.((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).))))........... ( -35.80) >DroPse_CAF1 4850 113 + 1 AUUAA----AAAAAGUUAGUUUCAUCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAACGUCGUGCGGC .....----...........((((.((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).))))((.....)).. ( -36.50) >DroSim_CAF1 6284 106 + 1 ---AA---AAAAAAG-----UCAACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAGCAUAGUUCGUC ---..---.......-----.....((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))))..((((...))))... ( -33.40) >DroYak_CAF1 4646 116 + 1 AAAAAGUACAAAAAAGU-AUUCAGCCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGUUGAGCUGAGCGCGUC ...............(.-.((((((((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))))....))))))..)... ( -41.40) >DroAna_CAF1 4643 111 + 1 AGAA-----AAAAAAUU-AAUCAUCCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAAAGCCGUGCGCC ....-----........-..(((..((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).)))............ ( -33.60) >DroPer_CAF1 4901 113 + 1 AUUAA----AAAAAGUUAGUUUCAUCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAACGUCGUGCGGC .....----...........((((.((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))).))))((.....)).. ( -36.50) >consensus A__AA____AAAAAAUU_AUUCAACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAGCUGAACGUAGUGCGUC .........................((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))))................ (-31.90 = -31.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:13 2006