Locus 4782

Sequence ID 3L_DroMel_CAF1
Location 13,403,978 – 13,404,069
Length 91
Max. P 0.979895
window7532

overview

Window 2

Location 13,403,978 – 13,404,069
Length 91
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 76.38
Mean single sequence MFE -42.00
Consensus MFE -27.27
Energy contribution -26.78
Covariance contribution -0.50
Combinations/Pair 1.34
Mean z-score -2.21
Structure conservation index 0.65
SVM decision value 1.85
SVM RNA-class probability 0.979895
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13403978 91 + 23771897
GUGG------UUGCC---GCUGCUGCUGGCGUCGAGUGUCGCAUGUUGCUGCUGGAAUUGUGGCGACGUGGCGUGGCGUAGGCGG---ACGCUUGACGCUGGU
((((------...))---))....((..(((((((((((((((((((((..(.......)..))))))).))...((....)).)---)))))))))))..)) ( -46.30)
>DroSec_CAF1 604 97 + 1
GUGGAUGAUGUUGCC---GCUGCUGCUGGCGUCAAGUGUCGCAUGUUGCUGCUGGAAUUGUGGCGACGCGGCGUGGCGUAGGCUG---UAGCUUGCCGCUGGU
(((.........(((---((.(((((..(((.(....).)))..(((((..(.......)..)))))))))))))))((((((..---..))))))))).... ( -41.90)
>DroSim_CAF1 841 97 + 1
GUGGAUGAUGUUGCC---GCUGCUGCUGGCGUCAAGUGUCGCAUGUUGCUGCUGGAAUUGUGGCGACGCGGCGUGGCGUAGGCUG---UAGCUUGCCGCUGGU
(((.........(((---((.(((((..(((.(....).)))..(((((..(.......)..)))))))))))))))((((((..---..))))))))).... ( -41.90)
>DroAna_CAF1 837 100 + 1
GCUG---GAGUCGGCGAUACUGCCACGGUGGCAGGAUGUCGCAUAUUGCUGUUAGAGUUGUGGCGACGGGGCGUGGCAUACGCGGCAUUUGAUUGUCGAGUGU
....---.(.((((((((.(((((.....)))))((((((((.(((.((..(....(((.((....)).))))..))))).))))))))..)))))))).).. ( -37.90)
>consensus
GUGG___AUGUUGCC___GCUGCUGCUGGCGUCAAGUGUCGCAUGUUGCUGCUGGAAUUGUGGCGACGCGGCGUGGCGUAGGCGG___UAGCUUGCCGCUGGU
........................((((((((((..((((((..(((((..(.......)..)))))))))))))))(((((((.....))))))).)))))) (-27.27 = -26.78 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:10 2006