Locus 478

Sequence ID 3L_DroMel_CAF1
Location 1,351,454 – 1,351,556
Length 102
Max. P 0.938287
window708

overview

Window 8

Location 1,351,454 – 1,351,556
Length 102
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 81.78
Mean single sequence MFE -49.03
Consensus MFE -29.06
Energy contribution -32.62
Covariance contribution 3.56
Combinations/Pair 1.09
Mean z-score -2.65
Structure conservation index 0.59
SVM decision value 1.29
SVM RNA-class probability 0.938287
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1351454 102 + 23771897
GCUCCGCCACCUGCCCUCUCUUUUCAGCCGUCUGCAACGGAAG--CAGACGCUGGGUAAAGGGAGU---------UAGGGGGUUC-GGAGGGACGGUGCAUGUCAUAAUAAUUA
.(((((((.(((...(((((((((((((.((((((.......)--))))))))))..)))))))).---------..)))))..)-)))).((((.....)))).......... ( -42.20)
>DroSec_CAF1 6994 100 + 1
GCUCCGCCACCUGCCCUCUCUUUUCAGCCGUCUGCGACGGAAG--CAGACACAGGGGCAAGGGAGU---------UAGG-GGUUC-GG-GGGGCGGUGCAUGUCAUAAUAAUUA
((.(((((.(((((((((((((((..(((((((((.......)--))))).....)))))))))).---------..))-)))..-))-).))))).))............... ( -43.00)
>DroEre_CAF1 2823 114 + 1
GCUCCGCCACCUGCCCUCUCUUUCCUGCCGUCUGCGACGGAAGCGCAGACACAGGAGCAGAGGGGUAGGGGGCGGUAGGGGGAUCGAGGGGGGCGGUGCAUGUCAUAAUAAUUA
((.(((((.(((((((.((((((((((..(((((((.(....)))))))).)))))).)))))))))))...((((......)))).....))))).))............... ( -60.20)
>DroYak_CAF1 7935 110 + 1
GCUCCGCCACCUGCCCUCUCUUUCCUGCCGUCUGCGACGGAAG--CAGACACACCGGCGGAGGGGUAGGGGGU--UCGCGGGGUUCGGGGGGGCGGUGCAUGUCAUAAUAAUUA
((.(((((.((((((((...(..((((((((((((.......)--)))))...((......))))))))..).--....)))))..)))..))))).))............... ( -50.70)
>consensus
GCUCCGCCACCUGCCCUCUCUUUCCAGCCGUCUGCGACGGAAG__CAGACACAGGGGCAAAGGAGU_________UAGGGGGUUC_GGGGGGGCGGUGCAUGUCAUAAUAAUUA
((.(((((.(((((((((((((((((((((((((...(....)..))))).....))))))))))...........))))))).....)))))))).))............... (-29.06 = -32.62 +   3.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:57 2006