| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,397,414 – 13,397,531 |
| Length | 117 |
| Max. P | 0.619413 |
| Location | 13,397,414 – 13,397,531 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.59 |
| Mean single sequence MFE | -31.59 |
| Consensus MFE | -21.06 |
| Energy contribution | -20.70 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13397414 117 - 23771897 UCUGACCAUUGUGAGAUGUCCUUACAAGUAUGGCUGGGACUUUCCUACAAAGCAAUGCAAGCCUAGCAGCGAGGCUCAGUGCUUUAGUUA-UAGCUACUAGAUUUAUCUUUAGAAGCU ........(((((((.....))))))).((((((((((.....)))..((((((.((..(((((.......))))))).)))))))))))-))(((.(((((......))))).))). ( -31.80) >DroSec_CAF1 13038 115 - 1 UCUGACCAUUGUGAGGUGUCCUUACAAAUAUGGCUGGGACCUUCCCACAAAGCAAUGCAAGCCGAUCAGCGAGACUCAGUGCUUUACUCA-UAACUACUAGAUUUAUCUUUAGAGA-- .((((.(.((((((((...))))))))....(((((((.....))).....((...)).))))).)))).(((.............))).-...((.(((((......))))))).-- ( -25.32) >DroSim_CAF1 10026 97 - 1 UCUGACCAUUGCGAGGUGUCCUUACAAAUAUGGCUGGGACCUUCCCACAAAGCAAUGCAAGCCGAUCAGCGAGGCUCAGUGCUUUACUCA-AAACUAA-------------------- ..(((....((.((((.(((((..((....))...))))))))).)).((((((.((..((((.........)))))).))))))..)))-.......-------------------- ( -24.00) >DroEre_CAF1 10632 117 - 1 UCUGACCAUUGUGAGGUGUCCUUACAAGCAUGGCUGGGACCUUCCCACAAAGCAAUGCAGGCCGAUCGGCGAGGCUCAUUGCUUUAGUUA-CCGCCACUAGAUUUAUCUUUACAGAUA ((((....((((((((...))))))))...((((((((.....)))).(((((((((..((((.........))))))))))))).....-..))))...............)))).. ( -38.10) >DroYak_CAF1 10180 117 - 1 UCUGACCAUUGUGAGGUGUCCUUACAAAUAUGGCUGGGACUUUCCCACAAAGCAAUGCAAGCCGGUAAGCGAGGCUCAGUGCUUUAGUUA-UAACUACUAGAUUUCUAUUUGGAGGUG ....(((.((((((((...)))))))).((((((((((.....)))..((((((.((..((((.........)))))).)))))))))))-))....((((((....)))))).))). ( -35.00) >DroAna_CAF1 19748 110 - 1 CCUGACCAUAGUGCGGUGUCCCUACGACUACGGCUGGGACUCCCCCACGGAGCAGUGCCGGCCAAAGGCACAAGCCAAUUGCUUUAGUUUGUAGGUC------UUGAAUUUAGAGA-- ...((((...(((.((.(((((..((....))...)))))..)).))).((((.(((((.......)))))((((.....))))..))))...))))------.............-- ( -35.30) >consensus UCUGACCAUUGUGAGGUGUCCUUACAAAUAUGGCUGGGACCUUCCCACAAAGCAAUGCAAGCCGAUCAGCGAGGCUCAGUGCUUUAGUUA_UAACUACUAGAUUUAUCUUUAGAGA__ ..........(((.((.(((((..((....))...)))))...)))))((((((.((..((((.........)))))).))))))................................. (-21.06 = -20.70 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:58 2006