| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,390,316 – 13,390,413 |
| Length | 97 |
| Max. P | 0.788863 |
| Location | 13,390,316 – 13,390,413 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 72.33 |
| Mean single sequence MFE | -16.18 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.05 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13390316 97 + 23771897 ACGAAAGGAAACACAAAGA---UAUGUAAAGUACGCCAGCGUACAUAAAUUAUUGUAUUAUGAAAUGAAAUAUACUAGUUUUUGCAUAGCUCGCCGAUUA .(((..(....).......---(((((((((((((....)))))...(((((.((((((.........)))))).)))))))))))))..)))....... ( -18.50) >DroVir_CAF1 3660 83 + 1 ACAG-UUUAAA----CAUA---UGUAUAAAGUGCGCCUGCGUACGUAAAUUAUUGUAUUAUGAAAUGAAAUAAAUUAGUUUUUGCAUAAAA--------- ....-......----..((---((((.((((((((....))))).(((.(((((.((((....)))).))))).))).))).))))))...--------- ( -13.00) >DroPse_CAF1 7653 100 + 1 AUUAAAAGAAACAAGGAUAUAUUAUGUAAAGUACGCCAGCGUACAUAAAUUAUUGUAUUAUGAAAUGAAGUAUACUAGUUUUUGCAUAGCCCGUUGUACU ..........((((((.....((((((((((((((....)))))...(((((.((((((.........)))))).)))))))))))))).)).))))... ( -17.90) >DroMoj_CAF1 3493 83 + 1 ACAG-UUUAAA----CAUA---UGUAUAAAGUGCGCCAGCGUACGUAAAUUAUUGUAUUAUGAAAUGAAAUAAACUAGUUUUUGCAUGAAA--------- .(((-(..(((----(...---........(((((....))))).....(((((.((((....)))).)))))....))))..)).))...--------- ( -12.50) >DroAna_CAF1 11594 93 + 1 AAGA-CGAAAACGCAACCA---CAUGCAAGGUACGUCCGCGUACGCAAAUUAUUGUAUUAUGAAGUGAAAUAUAUUAGUUUUGGCAUAUGUC---CUGUU ..((-((.....(((....---..)))...(((((....)))))((.(((((.((((((.........)))))).)))))...))...))))---..... ( -17.30) >DroPer_CAF1 7846 100 + 1 AUUAAAAGAAACAAGGAUAUAUUAUGUAAAGUACGCCAGCGUACAUAAAUUAUUGUAUUAUGAAAUGAAGUAUACUAGUUUUUGCAUAGCCCGUUGUACU ..........((((((.....((((((((((((((....)))))...(((((.((((((.........)))))).)))))))))))))).)).))))... ( -17.90) >consensus ACAA_AAGAAACA__AAUA___UAUGUAAAGUACGCCAGCGUACAUAAAUUAUUGUAUUAUGAAAUGAAAUAUACUAGUUUUUGCAUAGCAC___GU__U ......................(((((((((((((....)))))...(((((.((((((.........)))))).)))))))))))))............ (-12.10 = -12.05 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:52 2006