Locus 4773

Sequence ID 3L_DroMel_CAF1
Location 13,389,588 – 13,389,686
Length 98
Max. P 0.511395
window7514

overview

Window 4

Location 13,389,588 – 13,389,686
Length 98
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 75.13
Mean single sequence MFE -29.55
Consensus MFE -19.49
Energy contribution -19.35
Covariance contribution -0.14
Combinations/Pair 1.37
Mean z-score -1.05
Structure conservation index 0.66
SVM decision value -0.04
SVM RNA-class probability 0.511395
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13389588 98 + 23771897
UUAUUCGCCGGACUUGAAGUAUUUGGUGGCUUGCGAUGCCCAUCGCAAGGUGGUGCUCUACUCAGUGGAGGAGUACAAGGUAUUAAGGA--------------AUCAUAAAU--
....((((((((.........))))))))(((..((((((((((....))))(((((((.((....)).)))))))..)))))).))).--------------.........-- ( -28.90)
>DroPse_CAF1 6931 98 + 1
CUACUCGCCAGAUCUGAAGUAUUUGGUCGCCUGCGAUGCCCAUCGCAAGGUGGUACUCUACUCGGUUGAGGAAUACAAGGUAAUGAGUGG-------------CGGACUGA---
(((((((....((((...((((((..(((((((((((....))))).))))))..(((.........))))))))).))))..)))))))-------------........--- ( -30.00)
>DroGri_CAF1 2650 113 + 1
CUAUUCACCGGAUCAAAAGUAUUUGGUUGCCUGCGAUGCUCAUCGCAAGGUGGUCCUUUACUCGGUGGAGGAAUAUAAGGUAGGGGGCG-AUAUAGAUAAUAAAACAAUAAUAC
((((.((((.(((((((....)))))))...((((((....)))))).))))((((((((((..(((......)))..)))))))))).-..)))).................. ( -32.30)
>DroEre_CAF1 2687 99 + 1
AUACUCCCCGGACUUGAAAUAUUUGGUGGCUUGCGAUGCCCAUCGCAAGGUGGUGCUCUACUCGGUGGAGGAGUACAAGGUAUUAAGGAA-------------AACACAAAU--
....................(((((((..(((..((((((((((....))))((((((..(((....)))))))))..)))))).)))..-------------.)).)))))-- ( -27.60)
>DroAna_CAF1 10630 95 + 1
CUACUCGCCAGACCAAAAGUAUCUGGUGGCUUGUGACGCCCAUCGCAAGGUCGUGCUCUACUCUGUAGAGGAAUACAAGGUAGGAU-----------------AUCAUCGAU--
....((((((((.........))))))))(((((((......)))))))((((((.(((((..((((......))))..)))))..-----------------..)).))))-- ( -28.50)
>DroPer_CAF1 7128 98 + 1
CUACUCGCCAGAUCUGAAGUAUUUGGUCGCCUGCGAUGCCCAUCGCAAGGUGGUACUCUACUCGGUUGAGGAAUACAAGGUAAUGAGUGG-------------CGGACUGA---
(((((((....((((...((((((..(((((((((((....))))).))))))..(((.........))))))))).))))..)))))))-------------........--- ( -30.00)
>consensus
CUACUCGCCAGACCUGAAGUAUUUGGUGGCCUGCGAUGCCCAUCGCAAGGUGGUGCUCUACUCGGUGGAGGAAUACAAGGUAAUAAGGG______________AACACUAAU__
...........((((...((((((..(((((((((((....))))).))))))..((((((...)))))))))))).))))................................. (-19.49 = -19.35 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:51 2006