Locus 477

Sequence ID 3L_DroMel_CAF1
Location 1,350,574 – 1,350,667
Length 93
Max. P 0.563937
window707

overview

Window 7

Location 1,350,574 – 1,350,667
Length 93
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 72.06
Mean single sequence MFE -28.91
Consensus MFE -11.91
Energy contribution -12.30
Covariance contribution 0.39
Combinations/Pair 1.25
Mean z-score -1.80
Structure conservation index 0.41
SVM decision value 0.06
SVM RNA-class probability 0.563937
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1350574 93 + 23771897
----GAACAUGUUGUG-------GCUCUCUUAUACUCACACUACUACGCAACGUGUUCGAACAGCUGUUGCAACAACUGAGA---GACGGAGCAGCGCAACAUGUUU
----((((((((((((-------.((((((....(((.((.......((((((.(((.....)))))))))......)).))---)..)))).)))))))))))))) ( -29.62)
>DroPse_CAF1 23854 100 + 1
UAAGCAACAUGCUGCA--AGCGAACGCUCUUAUAUGCUCUCUUAUACGCAACAUGCUCGAACAGCUGUUGUU----CUGCGCUGGCCUGCAACA-UCGAACAAGUUC
........(((.((((--.((.(.(((...((((........)))).((((((.(((.....))))))))).----..))).).)).)))).))-)........... ( -21.60)
>DroSec_CAF1 6070 98 + 1
----GAACAUGUUGUG--GACCAGCUCUCUUAUACUCACUCUACUACGCAACGUGUUCGAACAGCUGUUGCAACAACUGAGA---GGCGGAGCAGCGCAACAUGUUU
----((((((((((((--.....((((((((...((((.........((((((.(((.....)))))))))......)))))---)).)))))..)))))))))))) ( -28.66)
>DroEre_CAF1 1760 100 + 1
----ACACAUGUUGUGUAUAGGCGCUCUCUUAUACUCACACUACUACGCAACGUGUUCGAACAGCUGUUGCAACAACUGAGA---GGCGGACAGGCGCAACAUGUUC
----..(((((((((((.....(((.((((((((.......))....((((((.(((.....)))))))))......)))))---)))).....))))))))))).. ( -30.50)
>DroYak_CAF1 6859 98 + 1
----GAACAUGUUG--GAGCGCCGCUCUCUUAUACGCACUCUGCUACGCAACGUGUUCGAACAGCUGUUGCAACAACUGAGA---GACGCAGCAGCGCAACAUGUUC
----((((((((((--..((((.(((((((((...((.....))...((((((.(((.....)))))))))......)))))---)).)).)).)).)))))))))) ( -37.80)
>DroPer_CAF1 24371 100 + 1
UAAGCAACAUGCUGCA--AGCGCACGCUCUUAUAUGCUCUCUUAUACGCAACAUGCUCGAACAGCUGUUGUU----CUGCGCUGGCCUGCAACA-UCGAACAAGUUC
.........(((.((.--((((((.((........))..........((((((.(((.....))))))))).----.)))))).))..)))...-............ ( -25.30)
>consensus
____GAACAUGUUGUG__AACGCGCUCUCUUAUACGCACUCUACUACGCAACGUGUUCGAACAGCUGUUGCAACAACUGAGA___GACGCAGCAGCGCAACAUGUUC
.....((((((((..................................((((((.(((.....)))))))))...............(((......))))))))))). (-11.91 = -12.30 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:56 2006