Locus 4767

Sequence ID 3L_DroMel_CAF1
Location 13,381,084 – 13,381,180
Length 96
Max. P 0.731673
window7503

overview

Window 3

Location 13,381,084 – 13,381,180
Length 96
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 77.41
Mean single sequence MFE -26.83
Consensus MFE -16.12
Energy contribution -17.25
Covariance contribution 1.12
Combinations/Pair 1.22
Mean z-score -1.88
Structure conservation index 0.60
SVM decision value 0.43
SVM RNA-class probability 0.731673
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13381084 96 - 23771897
GUUGCCCAGAGUCCAGUAGCAGCGCCAAUCGCACACUGGAAACAAUUGUGGUGUC------------AUUUGCGGCAAUAAGGGCGAUAUACAUGUAUUUGAAAAGUA-----
(((((((.(..((((((....(((.....)))..))))))..).(((((.(((..------------...))).)))))..)))))))....................----- ( -27.50)
>DroSec_CAF1 52561 101 - 1
GUUGCCCAGAGUCCAGUAGCAGCGCCAAUAGUACACUGGAAACAAUUGUGGUGUC------------AUCUGCGGAAAUAAGGGCGACAUACAUAUAUUUGAAAAGUAUAAAA
(((((((....(((.((((..((((((.((((....((....)))))))))))).------------..))))))).....))))))).....((((((.....))))))... ( -31.70)
>DroSim_CAF1 52479 101 - 1
GUUGCCCAGAGUCCAGUAGCAGCGCCAAUCGUACACUGGAAACAAUUGUGGUGUU------------AUCUGCGGAAAUAAGGACGACAUACAUAUAUUUGAAAAGUAUAAAA
((((((.....(((.((((.(((((((.........((....))....)))))))------------..))))))).....)).)))).....((((((.....))))))... ( -24.02)
>DroEre_CAF1 53122 104 - 1
GUUGCCCAGAGUCCAGAUGCAGCGCCAAUCGUGCACUGGAAACAAUCGCGCAGUAAGCAUGGAAUUAAUA---GGAAAAUAGGGGAACAU------AUUUGAAGAGUAUGGAA
(((.(((.((.(((((.((((.((.....))))))))))).....))((.......))............---........))).)))..------................. ( -24.10)
>consensus
GUUGCCCAGAGUCCAGUAGCAGCGCCAAUCGUACACUGGAAACAAUUGUGGUGUC____________AUCUGCGGAAAUAAGGGCGACAUACAUAUAUUUGAAAAGUAUAAAA
(((((((.(..((((((....(((.....)))..))))))..)..((((((..................))))))......)))))))......................... (-16.12 = -17.25 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:40 2006