Locus 4766

Sequence ID 3L_DroMel_CAF1
Location 13,379,485 – 13,379,584
Length 99
Max. P 0.671330
window7502

overview

Window 2

Location 13,379,485 – 13,379,584
Length 99
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 82.24
Mean single sequence MFE -37.32
Consensus MFE -26.89
Energy contribution -27.42
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.70
Structure conservation index 0.72
SVM decision value 0.29
SVM RNA-class probability 0.671330
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13379485 99 - 23771897
---CCUUUCGCAA------UGGUCAGUUGGGGCCACCGCAACGG------CAACAGCAACCUUUUGGCUUUGGGCUAAUCGCCCAUCGAGGCUCCUUUGGCCAGAAGA--GAGCCA
---.(((((....------(((((((..((((((...((...(.------...)..(((....)))))..(((((.....)))))....)))))).)))))))...))--)))... ( -37.50)
>DroPse_CAF1 29660 97 - 1
CAGCCA--AACAAUUUGGUUGGUCAGUUGGGGC-----------------ACACUGCAACCUUUUGGCUUUGGGCUAAUCGCCCAUCGUGGCUCCUCCGGCCAGAAGAGAGAGCCA
((((((--(.....)))))))(((((..((.((-----------------.....))..))..)))))..(((((.....)))))...(((((((((.........))).)))))) ( -36.30)
>DroSec_CAF1 51004 99 - 1
---CCAUCCGCAA------UGGUCAGUUGGGGCCACCGCAACGG------CAACGGCAACCUUUUGGCUUUGGGCUAAUCGCCCAUCGAGGCUCCUUUGGCCAGAAGA--GAGCCA
---......((..------(((((......)))))..))...(.------...)(((...(((((((((.(((((.....)))))..(((....))).))))))))).--..))). ( -36.50)
>DroSim_CAF1 50934 99 - 1
---CCAUGCGCAA------UGGUCAGUUGGGGCCACCGCAACGG------CAACGGCAACCUUUUGGCUUUGGGCUAAUCGCCCAUCGAGGCUCCUUUGGCCAGAAGA--GAGCCA
---...((((...------(((((......))))).))))..(.------...)(((...(((((((((.(((((.....)))))..(((....))).))))))))).--..))). ( -38.30)
>DroEre_CAF1 51637 95 - 1
------------A------UGGUCAGUUGGGGCCACCGCAACGGCAAUGGCAACGGCAACCUUUUGGCUUUC-GCUAAUCGCCCAUCGAGGCUCCUUUGGCCAGAAGA--GAGCCA
------------.------.(((..((((..((((..((....))..))))..)))).)))...((((((((-((.....))...((..((((.....)))).)).))--)))))) ( -33.40)
>DroYak_CAF1 53380 103 - 1
---CGA--CGCAA------UGGUCAGUUGGGGCCAUCGCAAUGGCAAUGGCAACGGCAACCUUUUGGCUUUGGGCUAAUCGCCCAUCGAGGCUCCUUUGGCCAGAAGA--GAGCCA
---(((--.((..------.(((..((((..(((((.((....)).)))))..)))).))).....))..(((((.....)))))))).(((((((((.....)))).--))))). ( -41.90)
>consensus
___CCA__CGCAA______UGGUCAGUUGGGGCCACCGCAACGG______CAACGGCAACCUUUUGGCUUUGGGCUAAUCGCCCAUCGAGGCUCCUUUGGCCAGAAGA__GAGCCA
...................(((((((..((((((.........................((....))...(((((.....)))))....)))))).)))))))............. (-26.89 = -27.42 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:39 2006