| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,377,451 – 13,377,544 |
| Length | 93 |
| Max. P | 0.947435 |
| Location | 13,377,451 – 13,377,544 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.67 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -14.47 |
| Energy contribution | -15.33 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13377451 93 - 23771897 CAAACGC---------------A--GGGGCACGCU--GAGGGUGUCGUAAAUAAAAUGUCGC-CGACAUGAAAAAACAGAGAAUGGAAAUUAUAUACGACUCUC------GAACUUGUG ....(((---------------(--((((....))--..(((.((((((.((((.(((((..-.))))).......((.....))....)))).)))))).)))------...)))))) ( -21.80) >DroSec_CAF1 48894 94 - 1 CAAACGC---------------AGAGGGGCUCGCU--GAGGGUGUCGUAAAUAAAAUGUCGC-CGACAUGAA-AAACAGAGAAUGGAAAUUAUUUACGACUCUC------GACCCUGUG ....(((---------------((.((((....))--..(((.(((((((((((.(((((..-.)))))...-...((.....))....))))))))))).)))------..))))))) ( -27.50) >DroSim_CAF1 48809 94 - 1 CAAACGC---------------AGAGGGGCUCGCU--GAGGGUGUCGUAAAUAAAAUGUCGC-CGACAUGAA-AAACAGAGAAUGGAAAUUAUUUACGACUCUC------GACCCUGUG ....(((---------------((.((((....))--..(((.(((((((((((.(((((..-.)))))...-...((.....))....))))))))))).)))------..))))))) ( -27.50) >DroEre_CAF1 49210 88 - 1 CAAACGC---------------AG--------------AGGGUGUCGUAAAUAAAAUGUCGC-CGACAUGAA-AAACAGAGAAUGGAAAUUAUUUACGACUCUCGAGCUCGAACCUGUG ....(((---------------((--------------.(((.(((((((((((.(((((..-.)))))...-...((.....))....))))))))))).)))(....)....))))) ( -23.30) >DroYak_CAF1 51130 81 - 1 CAAACGC---------------A----------------GGGUGUCGUAAAUAAAAUGUCGCCCGACAUGAA-AAACAGAGAAUGGAAAUUGUUUACGACUCUC------GAACCUGUG ....(((---------------(----------------((..(((((((((((.(((((....)))))...-...((.....))....)))))))))))....------...)))))) ( -24.50) >DroAna_CAF1 48208 104 - 1 CGACCGGGAGCGAAAAAAGCAAACAAAGGCUCGCUCCGAGGGUGUCGUAAAUAAAAUGUCGC-CCG-AUGGA-AA-----GGAGGGAAAUCGGUGGCAACUCUU------GAUC-UGUU ......(((((((.....((........)))))))))..(((((.(((.......))).)))-))(-(((((-.(-----((((...............)))))------..))-)))) ( -29.76) >consensus CAAACGC_______________AG_GGGGCUCGCU__GAGGGUGUCGUAAAUAAAAUGUCGC_CGACAUGAA_AAACAGAGAAUGGAAAUUAUUUACGACUCUC______GAACCUGUG .......................................(((.(((((((((((.(((((....))))).......((.....))....))))))))))).)))............... (-14.47 = -15.33 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:33 2006