Locus 476

Sequence ID 3L_DroMel_CAF1
Location 1,348,948 – 1,349,038
Length 90
Max. P 0.792920
window706

overview

Window 6

Location 1,348,948 – 1,349,038
Length 90
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 70.04
Mean single sequence MFE -18.91
Consensus MFE -7.92
Energy contribution -8.04
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -1.84
Structure conservation index 0.42
SVM decision value 0.59
SVM RNA-class probability 0.792920
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1348948 90 + 23771897
GUCAAUACUCGGUUGACGUCACA-AUUCUACGAUUUUAGCC------------------ACUGUGACAUUCUCCUAAUCCCUGGAAUACACUGCACAGUCUCCAUUUCU
..........((((((.(((...-.......))).))))))------------------((((((......(((........)))........)))))).......... ( -17.04)
>DroPse_CAF1 22547 85 + 1
CUCAAUACCCCAUUGAUGUCAUGGAUUCG------UUAGC-AUUGCAC-----------AAUGUGACAUUUUCCUAAUUCCAAUAAUC------ACCUUCUCCAUGGCU
.(((((.....))))).((((((((...(------(((.(-(((....-----------))))))))(((.....)))..........------......)))))))). ( -14.90)
>DroSec_CAF1 4537 88 + 1
GUCAAUACUCGGUUGACGUCACA-AUUCUACGAUUUUAGCC------------------ACAGUGACAUUCUCCUAAUCCCUGGAACACUCUGCUC--UCUCCAUUUCU
((((((.....))))))(((((.-...(((......)))..------------------...)))))....(((........)))...........--........... ( -14.40)
>DroEre_CAF1 64 106 + 1
GUCAAUACUCGGUUGACGUCACA-AUUCUCCGGCUUUAGCCAUGGCACGAUUUGUGCCCACACUGACAUUCUCCUAAUCCCAAAAACACACUGCUG--UCUGCAUUUCU
((((((.....))))))((((..-.......(((....)))..(((((.....))))).....))))........................(((..--...)))..... ( -24.10)
>DroYak_CAF1 5145 106 + 1
GUCAAUACUCGGUUGACGUCACA-AUUCUCCGGUUUUGGCCAUGGCACGAUUUGUGCCCACAGUGACAUUCUCCUAAUCCCAAAAACACACUGCUG--UCUUCAUUGCU
((((((.....))))))(((((.-.......(((....)))..(((((.....)))))....))))).........................((..--........)). ( -24.10)
>consensus
GUCAAUACUCGGUUGACGUCACA_AUUCUACGAUUUUAGCCAU_GCAC___________ACAGUGACAUUCUCCUAAUCCCAAAAACACACUGCUC__UCUCCAUUUCU
((((((.....))))))(((((........................................))))).......................................... ( -7.92 =  -8.04 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:55 2006