Locus 4759

Sequence ID 3L_DroMel_CAF1
Location 13,372,001 – 13,372,094
Length 93
Max. P 0.972857
window7490

overview

Window 0

Location 13,372,001 – 13,372,094
Length 93
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.74
Mean single sequence MFE -17.58
Consensus MFE -14.18
Energy contribution -14.02
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -2.21
Structure conservation index 0.81
SVM decision value 1.70
SVM RNA-class probability 0.972857
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13372001 93 + 23771897
ACACAACUCAAAUCGUCGGCCUACGUGGGCGACAUUUAUAUUAAACACGAAAACAUGAAAAC--------AACGAAAAGUAAAACACAGAAAUGGGUGAAA-
.....(((((..((((((.((.....)).)))).............................--------.((.....))........))..)))))....- ( -15.40)
>DroSec_CAF1 43586 91 + 1
ACACAACUCAAAUCGUCGGCUUACGUGGGCGACAUUU--AUUAAACACGAAAACGUGAAAAC--------AACGAAAAGUAAAACACAUAAAUGGGUGAAA-
.(((........(((((.((....)).)))))(((((--((....((((....)))).....--------.((.....)).......))))))).)))...- ( -19.00)
>DroSim_CAF1 43466 91 + 1
ACACAACUCAAAUCGUCGGCCUACGUGGGCGACAUUU--AUUAAACACGAAAACGUGAAAAC--------AACGAAAAGUAAAACACAUAAAUGGGUGAAA-
.....(((((....((((.((.....)).))))....--......((((....)))).....--------......................)))))....- ( -19.00)
>DroEre_CAF1 43839 87 + 1
ACACAACUCAAAUCGUCGGCCUACGUGGGCGACAUUU--AUUAAGCACGAAAACAUGAA----------AAACGACAAGUACAAC--AGAAAUGGGUGAAA-
.....(((((..((((((.((.....)).))))....--....................----------..((.....)).....--.))..)))))....- ( -15.40)
>DroYak_CAF1 45312 98 + 1
ACACAACUCAAAUCGUCGGCCUACGUGGGCGACAUUU--AUUAAACACGAAAACAUGAAAACAUGGAAAAAACGAAAAGUAAAAC--AGAAAUGGGUGAAAU
.....(((((..((((((.((.....)).)))).(((--(((...........((((....))))............))))))..--.))..)))))..... ( -19.10)
>consensus
ACACAACUCAAAUCGUCGGCCUACGUGGGCGACAUUU__AUUAAACACGAAAACAUGAAAAC________AACGAAAAGUAAAACACAGAAAUGGGUGAAA_
.....(((((....((((.((.....)).))))......................................((.....))............)))))..... (-14.18 = -14.02 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:26 2006