| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,371,331 – 13,371,442 |
| Length | 111 |
| Max. P | 0.775391 |
| Location | 13,371,331 – 13,371,442 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.48 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -25.08 |
| Energy contribution | -25.17 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13371331 111 + 23771897 UAUCGCUGUGGAUGAGCAGAUGUGUGGACAGGGUGGACGAACGCUUGAAGCUCUUGCCACACUGUUUGCACUAAAAAGAAAGACAU--AGACAAUAGAAAAAUACAUUAUUAA ....((((((..(........(((..(((((.((((.(((..((.....))..))))))).)))))..))).........)..)))--)).)..................... ( -29.83) >DroSec_CAF1 42924 102 + 1 UAUCGCUGUGGAUGAGCAGAUGUGUGGACAGGGUGGACGAACGCUUGAAGCUCUUGCCACACUGUUUGCACUGAAAG-----------AAACAAUAGAAAACAACAUUAUUAA ..((.((((......))))..(((..(((((.((((.(((..((.....))..))))))).)))))..))).....)-----------)........................ ( -27.90) >DroSim_CAF1 42808 102 + 1 UAUCGCUGUGGAUGAGCAGAUGUGUGGACAGGGUGGACGAACGCUUGAAGCUCUUGCCACACUGUUUGCACUGAAAG-----------AAACAAUAGAAAACAACAUUAUUAA ..((.((((......))))..(((..(((((.((((.(((..((.....))..))))))).)))))..))).....)-----------)........................ ( -27.90) >DroEre_CAF1 43184 108 + 1 UGUCGCUGUGGAUGAGCAGAUGUGUGGAGAGGGUGGACGAGCGCUUGAAGCUCUUGCCACACUGCUUGCACUGCAAG-AAACACAG--AGACAAUGGGA--AAACAUUAUAAA .(((.(((((.....((((.((((.(.((...((((.((((.((.....)).)))))))).)).).))))))))...-...)))))--.)))((((...--...))))..... ( -36.70) >DroYak_CAF1 44593 112 + 1 UAUCGCUGUGGAUGAGCAGAUGUGUGGACAGGGUGGACGAACGCUUGAAGCUCUUGCCACACUGUUUGCACUGAAAG-AAACACACACGGACAAUGGAAAAAAACAUUAUUAA ....((((((..((.......(((..(((((.((((.(((..((.....))..))))))).)))))..)))......-...))..))))).)((((........))))..... ( -32.69) >DroAna_CAF1 42219 104 + 1 UAUCGCUGUGGAUGAGCAGAUGCGUGGACAGGGUGGAUGAACGCUUGAAGCUCUUGCCACAUUGUUUGCACUGAAAG-AAACAA--------AAUGGAAAGCAAUGUUAAACA ....(((((((..((((....((((...((.......)).)))).....))))...)))).((((((..........-))))))--------.......)))........... ( -22.70) >consensus UAUCGCUGUGGAUGAGCAGAUGUGUGGACAGGGUGGACGAACGCUUGAAGCUCUUGCCACACUGUUUGCACUGAAAG_AAACAC____AGACAAUAGAAAAAAACAUUAUUAA ..((.((((......))))..(((..(((((.((((.(((..((.....))..))))))).)))))..))).........................))............... (-25.08 = -25.17 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:25 2006