| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,369,716 – 13,369,806 |
| Length | 90 |
| Max. P | 0.637382 |
| Location | 13,369,716 – 13,369,806 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.87 |
| Mean single sequence MFE | -34.15 |
| Consensus MFE | -25.35 |
| Energy contribution | -25.47 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13369716 90 - 23771897 ----------UU-------CGGGUGACGCGGUGAUCUUUGAUCUGUGCCCAAUGUGGCAUUUGGGGAAUGCCCUUUGUAAGUCGCCGCGUUACAGCAGGUACAC---AUC---------- ----------..-------...(((((((((((((.........(((((......)))))..((((....))))......)))))))))))))...........---...---------- ( -32.50) >DroPse_CAF1 17790 100 - 1 ----------UUCUUUAGCCGGGUGACGCGGUGAUCUUUGAUCUGUGGUCCAUGUGGCAUCCUGGGAAUGCCCUUUGUAAGCCGCCGCGUUACAGCAGGUACUACCCCUG---------- ----------.......(((..((((((((((((((...))))...(((.((...((((((....).)))))...))...)))))))))))))....)))..........---------- ( -33.50) >DroEre_CAF1 41606 88 - 1 ----------UU-------CGGGUGACGCGGUGAUCUUUGAUCUGUGCCCAAUGUGGCAUUUGGGGAAUGCCCUUUGUAAGUCGCCGCGUUACAGCAGGUACAU---C------------ ----------..-------...(((((((((((((.........(((((......)))))..((((....))))......)))))))))))))...........---.------------ ( -32.50) >DroYak_CAF1 42924 100 - 1 ----------UU-------CGGGUGACGCGGUGAUCUUUGAUCUGUGCCCAAAGUGGCAUUUGGGGAAUGCCCUUUGUAAGUCGCCGCGUUACAGCAGGUACAU---CCACCUCGACAAC ----------.(-------((.((((((((((((.(((...........(((((.(((((((...)))))))))))).)))))))))))))))...((((....---..))))))).... ( -37.50) >DroAna_CAF1 40656 100 - 1 CCGCUCCUGGUU-------CGGGUGACGCGGUGAUCUUUGAUCUGUGGCCAAUGUGGCAUGUGGGGAAUGUCCUUUGUACACCGCCGCGUUACAGCAGGUACAC---CGG---------- (((((((.....-------.))((((((((((((((...)))).(((..(((.(.(((((.......)))))).)))..))).))))))))))))).((....)---)))---------- ( -35.40) >DroPer_CAF1 17835 100 - 1 ----------UUCUUUAGCCGGGUGACGCGGUGAUCUUUGAUCUGUGGUCCAUGUGGCAUCCUGGGAAUGCCCUUUGUAAGCCGCCGCGUUACAGCAGGUACUUCUCCUG---------- ----------.......(((..((((((((((((((...))))...(((.((...((((((....).)))))...))...)))))))))))))....)))..........---------- ( -33.50) >consensus __________UU_______CGGGUGACGCGGUGAUCUUUGAUCUGUGCCCAAUGUGGCAUUUGGGGAAUGCCCUUUGUAAGCCGCCGCGUUACAGCAGGUACAU___CUG__________ ......................((((((((((((((...))))............(((....((((....))))......)))))))))))))........................... (-25.35 = -25.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:24 2006