| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,366,259 – 13,366,355 |
| Length | 96 |
| Max. P | 0.967569 |
| Location | 13,366,259 – 13,366,355 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.38 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -12.25 |
| Energy contribution | -12.08 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967569 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13366259 96 - 23771897 AAAAGGUAAAGCCCCAGCAAUUAAAACGACAAAAUCUAAACACGAAAUUGAGAACGGAUUUCGAUGGUAAAGGUGCAAAGUC-AAAGGGACA--GGGGC--------------------- ..........(((((.(((......((((.....))....(((((((((.......))))))).)))).....)))...(((-.....))).--)))))--------------------- ( -20.50) >DroPse_CAF1 14230 116 - 1 CAAAAGCCAAGUCCCGGCAAUUAAAAUGACAAAAUCUAAACACGAAAUUU-GUACGGAUUUUGUGAGAAAAGGUGCAAAGUC-AAAGCGACG--GUGGCAAAGACGAAGCCGGAGCCGGA .............(((((........((((...((((...((((((((((-....)))))))))).....)))).....)))-)......((--((..(......)..))))..))))). ( -30.20) >DroEre_CAF1 38244 96 - 1 AAAAGGUAAAGCCCCAGCAAUUAAAACGACAAAAUCUAAACACGAAAUUGGGUACGGAUUUCGAGAGUAAAGGUGCAAAGUC-AAAGGGACA--GGGGC--------------------- ..........(((((.(((......((((.....))......(((((((.(...).)))))))...)).....)))...(((-.....))).--)))))--------------------- ( -20.90) >DroYak_CAF1 39320 98 - 1 AAAGGGUAAAGCCCCAGCAAUUAAAACGACAAAAUCUAAACACCAAAUUGGGUACGGAUUUCGAGUGUAAAGGUGCAAAGUC-AAAGGGACAGAGGGGC--------------------- ..........(((((.(((......((..(.((((((..((.((.....))))..)))))).).)).......)))...(((-.....)))...)))))--------------------- ( -23.72) >DroAna_CAF1 37621 96 - 1 AAAAGCCG-AUCCUCCGCAAUUAAAAUGACAAAAUCUAAACACGAAAUUUCGUACGGAUUUUGUCAGAAAAGGUGCAAAGUCGAAAGGGGCA--GGGAA--------------------- ........-.(((((((((.......(((((((((((....((((....))))..))))))))))).......)))....((....)))).)--)))..--------------------- ( -27.94) >DroPer_CAF1 14242 116 - 1 CAAAAGCCAAGUCCCGGCAAUUAAAAUGACAAAAUCUAAACACGAAAUUU-GUACGGAUUUUGUGAGAAAAGGUGCAAAGUC-AAAGCGACG--GUGGCAAAGACGAAGCCGGAGCCGGA .............(((((........((((...((((...((((((((((-....)))))))))).....)))).....)))-)......((--((..(......)..))))..))))). ( -30.20) >consensus AAAAGGCAAAGCCCCAGCAAUUAAAACGACAAAAUCUAAACACGAAAUUG_GUACGGAUUUCGAGAGAAAAGGUGCAAAGUC_AAAGGGACA__GGGGC_____________________ ..........(((((.(((........((.....))......(((((((.......)))))))..........)))...(((......)))...)))))..................... (-12.25 = -12.08 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:20 2006