Locus 4752

Sequence ID 3L_DroMel_CAF1
Location 13,364,640 – 13,364,736
Length 96
Max. P 0.672198
window7480

overview

Window 0

Location 13,364,640 – 13,364,736
Length 96
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 88.05
Mean single sequence MFE -30.10
Consensus MFE -19.12
Energy contribution -21.38
Covariance contribution 2.25
Combinations/Pair 1.07
Mean z-score -2.58
Structure conservation index 0.64
SVM decision value 0.29
SVM RNA-class probability 0.672198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13364640 96 - 23771897
GCAGCAGUAGCUGCAG-AAAGGA-----GCCAUUGAACUUGGCCAAAACCCAGCGGAGGAUCAUUAGAGAAGUUUACUGAACGGCAGCAGGUUGAAGUUGAA
(((((....)))))..-......-----....((.(((((((((.....((......)).(((.((((....)))).)))..)))..)))))).))...... ( -21.70)
>DroSec_CAF1 36108 94 - 1
--AGCAGUGGCUGCAG-AAAGGA-----GCCAUUGAACUUGGCCAAAAUUCAGCGGAGGAUCAUUAGAGAAGUUUGCUGAACGGCAGCAGGUUGAAGUUGAA
--..((((((((.(..-...).)-----)))))))(((((((((....(((((((((...((....))....))))))))).)))..))))))......... ( -31.00)
>DroSim_CAF1 36022 96 - 1
GCAGCAGUGGCUGCAG-AAAGGA-----GCCAUUGAACUUGGCCAAAAACCAGCGGAGGAUCAUUAGAGAAGUUUGCUGAACGGCAGCAGGUUGAAGUUGAA
.(((((((((((.(..-...).)-----)))))).(((((((((......(((((((...((....))....)))))))...)))..))))))...)))).. ( -28.70)
>DroEre_CAF1 36552 97 - 1
GUAGCUGCUGC-----CAAAGGAACUUGGCCAUUGAACUUGGCCAAAACGCAGCGGAGGAUCAUUAGAGAAGUUUGCUGUGCGGCAGCAGGUUGAAGUUGAA
....(((((((-----(........(((((((.......)))))))..(((((((((...((....))....))))))))).))))))))............ ( -39.00)
>consensus
GCAGCAGUGGCUGCAG_AAAGGA_____GCCAUUGAACUUGGCCAAAACCCAGCGGAGGAUCAUUAGAGAAGUUUGCUGAACGGCAGCAGGUUGAAGUUGAA
(((((....)))))......((.......)).((.(((((((((....(((((((((...((....))....))))))))).)))..)))))).))...... (-19.12 = -21.38 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:17 2006