| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,364,015 – 13,364,117 |
| Length | 102 |
| Max. P | 0.652735 |
| Location | 13,364,015 – 13,364,117 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.44 |
| Mean single sequence MFE | -22.67 |
| Consensus MFE | -9.93 |
| Energy contribution | -9.53 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13364015 102 - 23771897 CAAAAACUUUGGCGCCAAUUUAAUG------------UCAGGGCGCUGUUAACUUACUCUGUAAUGAAGUAUAUCUUCAUCAA---UAGAUGGCGCUUUAACAUCUGUCAUUCAGUA .....(((.(((((........(((------------(.((((((((((......))(((((.((((((.....))))))..)---)))).)))))))).)))).)))))...))). ( -22.90) >DroSec_CAF1 35479 101 - 1 CAAAAACUUUGGCGCCA-UUUAAUG------------UAAAUGCGCUGUAAAACUACUCUGUAAUGCAGUAUACCAUCAUCAA---UAGAUGGCGCCUUAACAUCUGUCAUUCAGUA ..........(((((((-((((.((------------...(((.((((((..((......))..))))))....)))...)).---))))))))))).......(((.....))).. ( -28.00) >DroSim_CAF1 35404 101 - 1 CAAAAACUUUGGCGCCA-UUUAAUG------------UAAAUGCGUUGUAAAAUUAGUGUGUAAUGCAGUAUACCUUCAUCAA---UAGAUGGCGCCUUAACAUCUGUCAUUUAGUA ..........(((((((-((((.((------------....(((((((.............)))))))............)).---))))))))))).................... ( -22.71) >DroEre_CAF1 36049 110 - 1 --GAAAUAUGGGUGUAA-UAAAAUGUAAGCUGUAAUGUAAAUUUACUGUAAACUUAAGCUGA-AAGCAGUAUACAUUCACCAA---CAGAUGGCGCUUUAAAAUCCGUCAUUCAGUA --(((..((((((....-((((.(((...((((((((((....((((((.............-..)))))))))))).....)---)))...))).))))..))))))..))).... ( -20.56) >DroYak_CAF1 36921 102 - 1 --AAAAAGCUGGUGUAA-UAAAAUG------------UAAAUUUUCUGUAAACUUACGUUGUAACGCAGUAUACAUUCAUCAAUAAUAGAUGGCGCUUUUGAAGCUGUCAUUCAGUA --.((((((..((((..-...((((------------(((.(((.....))).)))))))...)))).........(((((.......))))).))))))...((((.....)))). ( -19.20) >consensus CAAAAACUUUGGCGCCA_UUUAAUG____________UAAAUGCGCUGUAAACUUACUCUGUAAUGCAGUAUACCUUCAUCAA___UAGAUGGCGCUUUAACAUCUGUCAUUCAGUA ..........(((((.............................(((((................))))).......((((.......))))))))).................... ( -9.93 = -9.53 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:16 2006