Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,345,159 – 1,345,264 |
Length | 105 |
Max. P | 0.643498 |
Location | 1,345,159 – 1,345,264 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 66.56 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -9.24 |
Energy contribution | -10.47 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.25 |
Mean z-score | -2.18 |
Structure conservation index | 0.43 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1345159 105 - 23771897 GUAGUUGACUUAGGUGAAGCAAACGCAGCUUGCACUGUGCAAACAAUCUGAAGUAACUAAACUUUGGAAAGUAAAAUAAAUACCAUUGCGCUAUACAAAUACAUU (((.(((.....((((((((.......)))).))))((((((....((..((((......))))..))..(((.......)))..))))))....))).)))... ( -24.20) >DroSec_CAF1 817 87 - 1 AUGGUUGACUUAGUUGGAGCAAAAGCAGCUUCCACUGUGCCAACAAUCUGGAGUAACUAAACUUUGGAAAGUAAAAUAAAUACCAUU------------------ ...((((.(.((((.(((((.......))))).)))).).))))..((..((((......))))..))...................------------------ ( -20.70) >DroYak_CAF1 1177 81 - 1 AUGGUUGACUGCAGAAGAGCAAAAACAGCU---ACUGCUCCAGC-UUCUUCUGUAACUUAACUUGGGAAAGUAAAGGAAAUAC--------------------UU .........(((((((((((......(((.---...)))...))-.))))))))).(((.((((....)))).))).......--------------------.. ( -19.00) >consensus AUGGUUGACUUAGGUGGAGCAAAAGCAGCUU_CACUGUGCCAACAAUCUGAAGUAACUAAACUUUGGAAAGUAAAAUAAAUACCAUU________________UU ...((((.....((((((((.......)))).))))....))))..((((((((......))))))))..................................... ( -9.24 = -10.47 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006