| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,352,139 – 13,352,232 |
| Length | 93 |
| Max. P | 0.708632 |
| Location | 13,352,139 – 13,352,232 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.58 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -13.66 |
| Energy contribution | -14.80 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13352139 93 - 23771897 CAGUCAAACUCAGCAGGGGAUACCCG-UAU---AUCCUUCGUGGAAU---UCUCCAAAACCAUGGAUAGUUCUAGAAGC------------ACAUUCGAUGGAAAUUGGCAA ..(((((........(((....))).-...---.(((.((.((((((---(.((((......)))).)))))))(((..------------...))))).)))..))))).. ( -25.80) >DroSec_CAF1 23685 93 - 1 CAGCCAAACUCAGCAGGGGAUACCCG-UAU---AUCCUUCGUGGAAU---UCUCCAAAACCAUCGAUAGUUCUAGAAGC------------ACAUUCGAUGGAAAUUGGUAA ..(((((.....((..((((((....-..)---)))))..))(((..---..)))....(((((((..((.(.....).------------))..)))))))...))))).. ( -26.10) >DroSim_CAF1 23495 93 - 1 CAGCCAAACUCAGCAGGGGAUACCCG-UAU---AUCCUUCGUGGAAU---UCUCCAAAACCAUGGAUAGUUCUAGAAGC------------ACAUUCGAUGGAAAUUGGCAA ..(((((........(((....))).-...---.(((.((.((((((---(.((((......)))).)))))))(((..------------...))))).)))..))))).. ( -28.50) >DroEre_CAF1 24284 96 - 1 CAGCCAAACUCAGCAGGGGAUACCCA-GGCGGGUUCCUUCGUGGAAU---UCUCCAAAAUCAUGGACAGUUCUAGAAGC------------ACAUUCGACGGAAAUCGGCAA ..(((.......((.(((....))).-.))(..((((.((.((((((---(.((((......)))).)))))))(((..------------...))))).))))..)))).. ( -31.10) >DroYak_CAF1 25049 96 - 1 CAGCCAAACUCAGCAGGGGAUACCCG-UAU---AUCCUUCGUGGAACAUCCUUCCAACAUCAUGGAUAGUUCUAGAAGC------------ACAUUCUAUGGAAAGCGGCAA ..(((..........(((....)))(-(..---...((((.((((((((((............)))).)))))))))).------------...(((....))).))))).. ( -25.20) >DroAna_CAF1 22547 95 - 1 CAUCUGAACCCAGCAGGGGAUACAGGGGCU---ACCUUUCGCGGAAU---U---------GGUGGAUAGUUCUAGAAUCUUUCAGAGAUACACUUUCA-GAGAACUAGG-AA ..((((..(((....)))....))))..((---(((.(((...))).---.---------)))))....((((((..(((((.((((.....)))).)-)))).)))))-). ( -22.20) >consensus CAGCCAAACUCAGCAGGGGAUACCCG_UAU___AUCCUUCGUGGAAU___UCUCCAAAACCAUGGAUAGUUCUAGAAGC____________ACAUUCGAUGGAAAUUGGCAA ..(((..........(((....)))...........((((.((((((.....((((......))))..)))))))))).............................))).. (-13.66 = -14.80 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:13 2006