| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,345,509 – 13,345,625 |
| Length | 116 |
| Max. P | 0.563517 |
| Location | 13,345,509 – 13,345,625 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 86.20 |
| Mean single sequence MFE | -29.26 |
| Consensus MFE | -18.82 |
| Energy contribution | -20.54 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13345509 116 - 23771897 UCAGUUAUCCUUCAUGCCUACUUUUUCGGGGCUCUUUUGAACUCUAAAGAAGUGUGCAUUGAAAUUUCCGUUUGUAGUUU-AGGCUAUAUUUUGGGUUUGAACGGAAAGCGAUGUGU ...(((.((((((((((.((((((((..(((.((....)).)))..)))))))).))).)))).............((((-(((((........)))))))))))).)))....... ( -32.80) >DroSec_CAF1 17379 116 - 1 UCAGUUAUUCUUCAUACCUACUUUUUCGGGGCUCUUUUGAACUCUGAAGAAAUGUGCAUUGAAAUUUCCGUUUGUAGUUU-AGGCUAUAAUUUGAGUUUGAACGGAAAACAAUGUAU .....................((((((((((.((....)).))))))))))..((((((((...((((((((((((((..-..)))))...........))))))))).)))))))) ( -29.30) >DroSim_CAF1 16933 116 - 1 UCAGUUAUCCUUCAUACCUACUUUUUCGGGGCUCUUUUGAACUCUGAAGAAAUGUGCAUUGAAAUUUCCGUUUGUAGUUU-AGGCUAUAAUUUGGGUUUGAACGGAAAGCAAUGUGU ...(((.(((((((.(((((.((((((((((.((....)).))))))))))....................(((((((..-..)))))))..))))).)))).))).)))....... ( -31.20) >DroEre_CAF1 17431 116 - 1 UCAGUUAUCCUUCAUAGCUACUUUUUCGGGGCU-UUUUAUACUCUGAAGAAUGUUGCAUUGAAAUUUCUGUUUGUAGUUUUGAGUUAUAAUUUGGGUUUCAGCAGAAUGCAAUGUGU ..((((((.....))))))((((((((((((..-.......)))))))))).)).((((((....(((((((.(....((..(((....)))..))...))))))))..)))))).. ( -25.00) >DroYak_CAF1 18127 111 - 1 UCAGUUAUCCUUCAUAGCUGCUUUUUCGGGGCUCUUUUAUGCUCUGAAGAAUGGUGCAUUGAAAUUUCCGUUUGUAGUUUUAACUUAUAAUAUGGGUUUCAGCAGAAAG------AU .(((((((.....))))))).(((((((((((........)))))))))))...(((..((((((..(((((((((((....)).))))).))))))))))))).....------.. ( -28.00) >consensus UCAGUUAUCCUUCAUACCUACUUUUUCGGGGCUCUUUUGAACUCUGAAGAAAUGUGCAUUGAAAUUUCCGUUUGUAGUUU_AGGCUAUAAUUUGGGUUUGAACGGAAAGCAAUGUGU .....................((((((((((.((....)).))))))))))...(((((((...((((((((((((((.....))))))...........)))))))).))))))). (-18.82 = -20.54 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:07 2006