Locus 4745

Sequence ID 3L_DroMel_CAF1
Location 13,345,269 – 13,345,364
Length 95
Max. P 0.510188
window7468

overview

Window 8

Location 13,345,269 – 13,345,364
Length 95
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 78.90
Mean single sequence MFE -30.42
Consensus MFE -18.74
Energy contribution -19.80
Covariance contribution 1.06
Combinations/Pair 1.26
Mean z-score -1.39
Structure conservation index 0.62
SVM decision value -0.05
SVM RNA-class probability 0.510188
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13345269 95 - 23771897
UUGAGCAACAUGUUUUUCCAAGUGUAAAGCGGAAACUCGCGUCAGCUGGGAGAUAUUGUCCCGAGUAUUUGCUGCGGAUGCUGGGAAAAUGCGGG-----
....(((.....((((((((.((((..((((((.((((((....)).((((.......)))))))).))))))....)))))))))))))))...----- ( -30.60)
>DroSec_CAF1 17149 95 - 1
UUUAGCAACCUGUUUUUUCAAGUGUAUAGCGGAAACUCGCGUCAGCUGGCAGAUAUUGUCCCGAGUAUUUGCUGCGGAUGCUGGGAAAAUCCGGG-----
........((((..(((((.........(.(....).)(((((.((.((((((((((......)))))))))))).)))))...)))))..))))----- ( -31.30)
>DroSim_CAF1 16693 95 - 1
UUUAGCAACCUGUUUUUUCAAGUGUAUAGCGGAAACUCGCGUCAGCUGGCAGAUAUUGUCCCGAGUAUUUGCUGCGGAUGCUGGGAAAAUGAGGG-----
........((((((((..((........(.(....).)(((((.((.((((((((((......)))))))))))).)))))))..))))).))).----- ( -31.50)
>DroEre_CAF1 17203 96 - 1
-UGAGCA---AGUUUUUCCAAGUGUAGAGCGGAAACUCGCGUCAGCUGGCAGAUAUUGUCCCGACUAUUUGCUGCGGAUGCUGGGAAAAUGCGGGAGUGC
-...(((---..((((((((......(((......)))(((((.((.((((((((..((....)))))))))))).))))))))))))))))........ ( -29.50)
>DroYak_CAF1 17904 99 - 1
UGCAGCACCCCGUUUUCUCAAGUGUAUAGCGGAAACUCGCGUCAGCUGGCAGAUAUUGUCCCGAGUAUUUGCUGCGGAUGCUGUGAAAGUGCG-GAGUGG
.....(((.((((((((.((........(.(....).)(((((.((.((((((((((......)))))))))))).))))))).))))..)))-).))). ( -33.90)
>DroAna_CAF1 16177 88 - 1
------AAGUUUUUUGCUCGAGCUUAGAA-GGAAAUGCGCGCCAGCUGGCAGACAUUGACCGAAGCAUUUCCAGUGAAUGGUCGCAAAAGUCGAG-----
------..........(((((.(((....-((((((((((....))((((((...))).)))..)))))))).((((....))))..))))))))----- ( -25.70)
>consensus
UUGAGCAACCUGUUUUUUCAAGUGUAUAGCGGAAACUCGCGUCAGCUGGCAGAUAUUGUCCCGAGUAUUUGCUGCGGAUGCUGGGAAAAUGCGGG_____
...........(((((((((..........(....)..(((((.((.((((((((((......)))))))))))).)))))))))))))).......... (-18.74 = -19.80 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:06 2006