Locus 4743

Sequence ID 3L_DroMel_CAF1
Location 13,340,933 – 13,341,047
Length 114
Max. P 0.576794
window7465

overview

Window 5

Location 13,340,933 – 13,341,047
Length 114
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.92
Mean single sequence MFE -24.29
Consensus MFE -15.99
Energy contribution -15.93
Covariance contribution -0.05
Combinations/Pair 1.21
Mean z-score -2.40
Structure conservation index 0.66
SVM decision value 0.09
SVM RNA-class probability 0.576794
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13340933 114 + 23771897
AGCUGCGAUUUUUCACCUCUGGUCCCAUCGCUA-----UGAAGGAAAUCCCCACUGACUUCUACCCUCUUUUCUCUACCGACUUGGGGAUUAUUUUCUUUCUCCAGCUGCAUUUUGCAC
(((((((((.....(((...)))...)))))..-----.((((((((((((((..............................)))))))....)))))))...))))((.....)).. ( -24.51)
>DroSec_CAF1 12777 114 + 1
AGCUGCGAUUUUUCACCCCUGGUCCCAUCGCUA-----UGAAGAAAAUCCCCACUGACUUCUACCCUCUUUUCUCUACCGACUUGGGGAUUAUUUUCUUUCUCCAGCUGCAUUUUGCAC
(((((((((.....(((...)))...)))))..-----.(((((.((((((((..............................)))))))).))))).......))))((.....)).. ( -24.21)
>DroSim_CAF1 12344 114 + 1
AGCUGCAAUUUUUCACCCCUGGUCCCAUCGCUA-----UGAAGAAAAUCCCCACUGACUUCUACCCUCUUUUCUCUACCGACUUGGGGAUUAUUUUCUUUCUCCAGCUGCAUUUUGCAC
(((((..............((((......))))-----.(((((.((((((((..............................)))))))).)))))......)))))((.....)).. ( -21.41)
>DroEre_CAF1 12942 113 + 1
UCCUGCGAUU-UUCACCUCCGCUCCCAUCGCUA-----UGAAGAAAAUCCCCACUGACUUCUACCCUCUUUUCUCUACCGACUUGGGGAUUAUUUUCUUUCUCCAGCUGCAUUUUGCAC
...(((((..-(.((.((..((.......))..-----.(((((.((((((((..............................)))))))).))))).......)).)).)..))))). ( -19.01)
>DroYak_CAF1 13405 114 + 1
UUCUGCGAUUUUUCACCUCUGGCGGCAUCGCUA-----UGAAGGAAAUCCCCACUGACUUCUACCCUCUUUUCUCUAGCGACUUGGGGAUUAUUUUCUUUCUCCAGCUGCAUUUUGCAC
...(((((....)).......(((((.((((((-----.((.(((((........(....).......)))))))))))))..((((((..........))))))))))).....))). ( -26.96)
>DroAna_CAF1 11860 108 + 1
------GAUUUCAUAGCUAUUAUCUCACCACCAGCAGCUGGAG--GAUACCCGCUCACAUUU--CCUUCGUCCU-CGUCGACUGGGGGAUUAUUUUCUUUCUCCGGCUGCAUUUUGCAC
------...........................((((((((((--((.............((--(((..(((..-....)))..))))).........))))))))))))......... ( -29.65)
>consensus
AGCUGCGAUUUUUCACCUCUGGUCCCAUCGCUA_____UGAAGAAAAUCCCCACUGACUUCUACCCUCUUUUCUCUACCGACUUGGGGAUUAUUUUCUUUCUCCAGCUGCAUUUUGCAC
.............................(((.......(((((.((((((((..............................)))))))).))))).......)))(((.....))). (-15.99 = -15.93 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:03 2006