Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,339,350 – 13,339,440 |
Length | 90 |
Max. P | 0.981937 |
Location | 13,339,350 – 13,339,440 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 96.44 |
Mean single sequence MFE | -16.37 |
Consensus MFE | -14.77 |
Energy contribution | -15.27 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.90 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13339350 90 + 23771897 CACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC ...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70) >DroSec_CAF1 11193 90 + 1 CACGCUUCGUAGCACAACCCAUCCAGCAACAAUAACAAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC ...(((..((.((............)).))...........(((.....((((((......)))))).....)))..........))).. ( -12.60) >DroSim_CAF1 10792 90 + 1 CACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC ...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70) >DroEre_CAF1 11381 90 + 1 UACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC ...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70) >DroYak_CAF1 11952 90 + 1 UACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC ...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70) >DroAna_CAF1 10749 90 + 1 CACGCCUCGCUGCACAAACCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUGGCAUGCCUCAGCUC ...(((.(((((...........)))).......(((((........)))))(((((.....)))))......).)))............ ( -18.80) >consensus CACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC ...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. (-14.77 = -15.27 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:02 2006