Locus 4741

Sequence ID 3L_DroMel_CAF1
Location 13,338,740 – 13,338,837
Length 97
Max. P 0.568198
window7463

overview

Window 3

Location 13,338,740 – 13,338,837
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.81
Mean single sequence MFE -32.39
Consensus MFE -18.90
Energy contribution -19.49
Covariance contribution 0.59
Combinations/Pair 1.08
Mean z-score -2.37
Structure conservation index 0.58
SVM decision value 0.07
SVM RNA-class probability 0.568198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13338740 97 + 23771897
GCCGCCUAAGUGGAUAAUGCAUUUCCUCAGCCAGAAAGGAAACAGCAAUGCUGGAGC---------GGCA-ACCGGCAGGACCAAAGGAACUCAGGCUGCGAAA-------GCA------
(((.(((...(((....(((.((((((.........))))))..))).((((((...---------....-.))))))...))).)))......))).((....-------)).------ ( -29.90)
>DroSec_CAF1 10598 97 + 1
GCCGCCUAAGUGGAUAAUGCAUUUCCUCAGCCAGAAAGGAAACAGCAAUGCUGGAGC---------GACA-ACCGGCAGGACCAAAGGAACUCAGGCUGCGAAA-------GCA------
(((.(((...(((....(((.((((((.........))))))..))).((((((...---------....-.))))))...))).)))......))).((....-------)).------ ( -29.90)
>DroSim_CAF1 10197 97 + 1
GCCGCCUAAGUGGAUAAUGCAUUUCCUCAGCCAGAAAGGAAACAGCAAUGCUGGAGC---------GACA-ACCGGCAGGACCAAAGGAACUCAGGCUGCGAAA-------GCA------
(((.(((...(((....(((.((((((.........))))))..))).((((((...---------....-.))))))...))).)))......))).((....-------)).------ ( -29.90)
>DroEre_CAF1 10784 103 + 1
GCCUCCUAAGUGGAUAAUGCAUUUCCUUAGCCAGAAAGGAAACAGCAAUGCUGGAGC---------GACA-ACCGGCAGGACCAAAGGAACUCUGGCUGGGAAA-------GCAAAGGAA
.(((((.....)))...(((.((((((.(((((((..(....).....((((((...---------....-.)))))).............)))))))))))))-------)))..)).. ( -36.20)
>DroYak_CAF1 11379 103 + 1
GCCUCCUAAGUGGAUAAUGCAUUUCCUCAGCCAGAGAGGAAACAGCAAUGCUGGAGC---------GACA-ACCGGCAGGACCAAAGGAACUCAGGCUGCGAAA-------GCAAAGGAA
(((((((...(((....(((.(((((((.......)))))))..))).((((((...---------....-.))))))...))).)))).....)))(((....-------)))...... ( -35.30)
>DroAna_CAF1 10322 108 + 1
GCCUUCUAAGUGGAUAAUGCAUUUCCUCAGCCAAAAAGGAAACAGCAAUGCCGAAGCUGGCUUGCAGGCAGGCAGGCAGGGCCAAAAAGAC------GACGAGGAGUCCUUCCA------
((((.....(.(((.........))).).(((.....(....).((((.((((....)))))))).))))))).((.((((((........------......).))))).)).------ ( -33.14)
>consensus
GCCGCCUAAGUGGAUAAUGCAUUUCCUCAGCCAGAAAGGAAACAGCAAUGCUGGAGC_________GACA_ACCGGCAGGACCAAAGGAACUCAGGCUGCGAAA_______GCA______
(((.(((...(((....(((.((((((.........))))))..))).((((((..................))))))...))).)))......)))....................... (-18.90 = -19.49 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:01 2006