Locus 4740

Sequence ID 3L_DroMel_CAF1
Location 13,337,981 – 13,338,074
Length 93
Max. P 0.528835
window7462

overview

Window 2

Location 13,337,981 – 13,338,074
Length 93
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -27.65
Consensus MFE -18.49
Energy contribution -18.49
Covariance contribution 0.01
Combinations/Pair 1.25
Mean z-score -1.42
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.528835
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13337981 93 - 23771897
GCUUCAACUUCAACUCCCCCGCAUUAUCAACA-------------UUUGAAGUAGGGCCGGAGAUUCG--CUCAAUCUCAGUGAUUGACAUGCGGGUUCGCAUGAUAC
.............(((((((..(((.(((...-------------..)))))).)))..)))).....--.((((((.....))))))((((((....)))))).... ( -23.80)
>DroGri_CAF1 19042 101 - 1
GGACCCGCGUCAUAUACCCC--AUUAUCAAUAGAAGCCGCUGCGAUAUCAAACGGCUUCGGAAUUUGGACUCCAAUCUCAGUGAUUGACAUGCGGGUU-GCAGG----
.(((((((((........((--(...((....(((((((.............))))))).))...)))....(((((.....)))))..)))))))))-.....---- ( -33.12)
>DroSec_CAF1 9832 93 - 1
GCUUCAACUUCAACUCCCCCGCAUUAUCAACA-------------UUUGAAGUGGGGCCGGAGAUUCG--CUCAAUCUCAGUGAUUGACAUGCGGGCUCGCAUGAUAC
((..............((((((.(((......-------------..))).))))))...(((.((((--(((((((.....))))))...))))))))))....... ( -27.50)
>DroSim_CAF1 9432 93 - 1
GCUUCAACUUCAACUCCCCCGCAUUAUCAACA-------------UUUGAAGUGGGGCCGGAGAUUCG--CUCAAUCUCAGUGAUUGACAUGCGGGCUCGCAUGAUAC
((..............((((((.(((......-------------..))).))))))...(((.((((--(((((((.....))))))...))))))))))....... ( -27.50)
>DroEre_CAF1 10051 91 - 1
GCUUCAACUUCAACUCCCCC--AUUAUCAACA-------------UUUGGAGUGGGGCCGGAGAUUCG--CUCAAUCUCAGUGAUUGACAUGCGGGCUCGCAUGAUAC
((..............((((--(((.(((...-------------..))))))))))...(((.((((--(((((((.....))))))...))))))))))....... ( -26.80)
>DroYak_CAF1 10633 93 - 1
GCUUCAACUUCAACUCCCCCGUAUUAUGCACA-------------UUUGGAGUGGGGCUGGAGAUUCG--CUCAAUCUCAGUGAUUGACAUGCGGGCUCGCAUGAUAC
.(((((.(((((.((((...((.......)).-------------...))))))))).))))).....--.((((((.....))))))((((((....)))))).... ( -27.20)
>consensus
GCUUCAACUUCAACUCCCCCGCAUUAUCAACA_____________UUUGAAGUGGGGCCGGAGAUUCG__CUCAAUCUCAGUGAUUGACAUGCGGGCUCGCAUGAUAC
(((((.(((((((.................................)))))))))))).............((((((.....))))))((((((....)))))).... (-18.49 = -18.49 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:00 2006