Locus 4739

Sequence ID 3L_DroMel_CAF1
Location 13,337,255 – 13,337,346
Length 91
Max. P 0.719828
window7461

overview

Window 1

Location 13,337,255 – 13,337,346
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 97.95
Mean single sequence MFE -14.28
Consensus MFE -14.10
Energy contribution -14.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.75
Structure conservation index 0.99
SVM decision value 0.40
SVM RNA-class probability 0.719828
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13337255 91 + 23771897
UAAAAAAGUAAAACGCGUUUUCAAAUAUUCCAAACACAAAAGCGGCUUGGCAAAUCCUCGAGAGCUAAGCAGCAUAUCACAAACGGCUCAC
..............((((((...........))))......((.(((((((............))))))).))............)).... ( -14.10)
>DroSec_CAF1 9047 91 + 1
UAAAAAAGUAAAACGCGUUUUCAAAUAUUCCAAACACAAAAGCGGCUUGGCAAAUCCUCGAGAGCUAAGCAGCAUAUCACAAACGGCUCAC
..............((((((...........))))......((.(((((((............))))))).))............)).... ( -14.10)
>DroSim_CAF1 8664 91 + 1
UAAAAAAGUAAAACGCGUUUUCAAAUAUUCCAAACACAAAAGCGGCUUGGCAAAUCCUCGAGAGCUAAGCAGCAUAUCACAAACGGCUCAC
..............((((((...........))))......((.(((((((............))))))).))............)).... ( -14.10)
>DroEre_CAF1 9200 90 + 1
UAAA-AAGUAAAACGCGUUUUCAAAUAUUCCAAACACAAAAGCGGCUUGGCAAAUCCUCGAGAGCUAAGCAGCAUAUCACAAACGGCUCAC
....-.........((((((...........))))......((.(((((((............))))))).))............)).... ( -14.10)
>DroYak_CAF1 9725 91 + 1
UAAAAAAGUAAGACGCGUUUUCAAAUAUUCCAAACACAAAAGCGGCUUGGCAAAUCCUCGAGAGCUAAGCAGCAUAUCACAAACGGCUCAC
...........((.((((((...........))))......((.(((((((............))))))).))............)))).. ( -15.20)
>DroAna_CAF1 8674 90 + 1
UAAA-AAGUAAAACGCGUUUUCACAUAUUCCAAACACAAAAGCGGCUUGGCAAAUCCUUGAGAGCUAAGCAGCAUAUCACAAACGGCUCAG
....-.........((((((...........))))......((.(((((((............))))))).))............)).... ( -14.10)
>consensus
UAAAAAAGUAAAACGCGUUUUCAAAUAUUCCAAACACAAAAGCGGCUUGGCAAAUCCUCGAGAGCUAAGCAGCAUAUCACAAACGGCUCAC
..............((((((...........))))......((.(((((((............))))))).))............)).... (-14.10 = -14.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:59 2006