Locus 4738

Sequence ID 3L_DroMel_CAF1
Location 13,336,264 – 13,336,359
Length 95
Max. P 0.623065
window7460

overview

Window 0

Location 13,336,264 – 13,336,359
Length 95
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 81.05
Mean single sequence MFE -21.47
Consensus MFE -13.00
Energy contribution -16.32
Covariance contribution 3.32
Combinations/Pair 1.14
Mean z-score -1.84
Structure conservation index 0.61
SVM decision value 0.18
SVM RNA-class probability 0.623065
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13336264 95 - 23771897
GGCGAUGAAAGAAUAAAUGCAGAUUACGAUUGUGCAGAAUUUCGAUUGAGAUUUGAAGUUUGUUCUUUUGUUGACGAAGUAAAUGUAA---UUCAACU
..(((..(((((((((((.((((((.((((((..........)))))).))))))..)))))))))))..)))...............---....... ( -23.60)
>DroSec_CAF1 8069 98 - 1
GGCGAUGAAAGAAUAAAUGCAGAUUACGAUUAUGCAGAAUUUCGAUUGAGAUUUAAGGUUUGUUCUUUUGUUGCCGAAGUAAAUGUAAAUGUUCAACU
(((((..((((((((((((((...........))).(((((((....)))))))...)))))))))))..)))))....................... ( -27.70)
>DroSim_CAF1 7665 98 - 1
GGCGAUGAAAGAAUAAAUGCAGAUUACGAUUAUGCAGAAUUUCGAUUGAGAUUUGAAGUUUGUUCUUUUGUUGCCGAAGUAAAUGUAAAUGUUAAACU
(((((..(((((((((((.((((((.(((((............))))).))))))..)))))))))))..)))))....................... ( -27.90)
>DroEre_CAF1 8242 95 - 1
GGUGUUAAAGGAAUAAAUGCAGAUUUCGAUUGUGCAGAAUUUCAUAUGAGACUUAAAGCUUUUUUAUUUGUGGUCGAAGUAAAUGCGA---UUCAGCU
..........((((...((((.(((((((((..(((((.((((....))))..(((((...)))))))))))))))))))...)))))---))).... ( -16.20)
>DroYak_CAF1 8813 81 - 1
GAUGUUAAAAGAAUAAAUGCAGCUUUCGAUUGUGCUGAAUUUCGAUUGAGAUU--------------UUGUUGCCGAAGUAAAUGUGA---UUCAACU
((.((((...........((((((((((((((..........)))))))))..--------------..)))))...........)))---))).... ( -11.95)
>consensus
GGCGAUGAAAGAAUAAAUGCAGAUUACGAUUGUGCAGAAUUUCGAUUGAGAUUUAAAGUUUGUUCUUUUGUUGCCGAAGUAAAUGUAA___UUCAACU
(((((((((((((((((((((...........))).(((((((....)))))))...))))))))))))))))))....................... (-13.00 = -16.32 +   3.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:58 2006