Locus 4737

Sequence ID 3L_DroMel_CAF1
Location 13,333,684 – 13,333,794
Length 110
Max. P 0.694136
window7459

overview

Window 9

Location 13,333,684 – 13,333,794
Length 110
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 84.32
Mean single sequence MFE -26.20
Consensus MFE -21.81
Energy contribution -21.75
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -1.60
Structure conservation index 0.83
SVM decision value 0.34
SVM RNA-class probability 0.694136
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13333684 110 - 23771897
UGUGCGUCU--CUCAUGCAUAGCGAGUGCAACUGUGCGCGUGUAUGCAUUUGCUUUUUGCUGUUUAUAUUUCUAAUAAAAAUGGUUCGUUAUUUUAUGCUCGAAUGCACUGC
.((((((..--.((..((((((((((((((((((....)).)).))))))))).....(((((((.(((.....))).))))))).........)))))..))))))))... ( -28.30)
>DroSec_CAF1 5565 92 - 1
UGA--------------------GAGUGCAUCUGUGCGCGUGUAUGCAUUUGCUUUUUGCUGUUUAUAUUUCUAAUAAAAAUGGUUCGUUAUUUUAUGCUUGGAUGCACUGC
...--------------------.((((((((((.(((.(((((.(((...((.....))))).)))))........(((((((....))))))).))).)))))))))).. ( -21.80)
>DroSim_CAF1 5142 112 - 1
UGUGCGUCUCUCUCAUGCAUAGUGAGUGCAUCUGUGCGCGUGUAUGCAUUUGCUUUUUGCUGUUUAUAUUUCUAAUAAAAAUGGUUCGUUAUUUUAUGCUCGGAUGCACUGC
(((((((.......)))))))...((((((((((.(((.(((((.(((...((.....))))).)))))........(((((((....))))))).))).)))))))))).. ( -30.10)
>DroEre_CAF1 5659 101 - 1
UGUGCGUCU--CC---------CAAGUGCAUCUGUGUGCGUGUGUGCAGUCGCUUUUUGCUGUUUAUAUUUCUAAUAAAAAUGGUUCGUUAUAUUAUGCUCGGAUGCACUGC
.........--..---------..((((((((((...(((((((.(((((........))))).)))))...........(((((.......))))))).)))))))))).. ( -24.60)
>consensus
UGUGCGUCU__CU_________CGAGUGCAUCUGUGCGCGUGUAUGCAUUUGCUUUUUGCUGUUUAUAUUUCUAAUAAAAAUGGUUCGUUAUUUUAUGCUCGGAUGCACUGC
........................((((((((((.(((((((....))..))).....(((((((.(((.....))).)))))))............)).)))))))))).. (-21.81 = -21.75 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:57 2006