| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,326,721 – 13,326,841 |
| Length | 120 |
| Max. P | 0.580172 |
| Location | 13,326,721 – 13,326,841 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.39 |
| Mean single sequence MFE | -37.87 |
| Consensus MFE | -16.14 |
| Energy contribution | -18.95 |
| Covariance contribution | 2.81 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13326721 120 + 23771897 CUUAAAACUGAAAUAUGAUUUUGCCCUCAAACAGGGGCAACUGCGCAUGCUCACCCUCGAAAAGAUCAAUUUCGGAAGGGUUCAAAUGCGAAAACGCUACAACAUGUUCCGCAAGGACAU ............(((((...(((((((......)))))))...(((((....((((((((((.......)))))..)))))....)))))............)))))(((....)))... ( -34.40) >DroPse_CAF1 20209 120 + 1 CCUCAAGCUGAAGUACGACUUUGCCCUCAAACAGAGCCGAGUGCGUCUGCUCACCACCGAAGUAACCAACUUCAAGCGCGUGCACAUCCGCAAGCGCAUUGGGAUGUUCCGCACCGACUU ......((.((((.....)))))).........(((.((.(((((...((((.(((..(((((.....)))))..((((.(((......))).))))..))))).))..))))))).))) ( -34.90) >DroSim_CAF1 2560 120 + 1 CCUGAAACUGAAAUAUGACUUUGCCCUCAAACAGGGGCAAUUGCGCAUGCUCACCCUCGAAAAGAUCAAUUUCGGAAGGGUUCAAAUGCGCAAACGCUACACCAUGUUCCGCAAGGACAU ............(((((...(((((((......)))))))((((((((....((((((((((.......)))))..)))))....)))))))).........)))))(((....)))... ( -40.00) >DroEre_CAF1 11716 120 + 1 CUUGAAACUGAAGUAUGACUUCGCCCUCAAGCAGGGGCAACUACGCAUGCUCACCCUCGAAAAGAUCAACUUCGGAAGGGUUCAGCUGCGGAAACGCUUCAGCAUGUUCCGCAAGGACAU .......(((((((........(((((......))))).....((((.(((.(((((((((.........))))..)))))..))))))).....))))))).((((.((....)))))) ( -42.00) >DroYak_CAF1 11333 120 + 1 CAUGAAACUGAAGUAUGACUUUGCCCUCAAACAGGGGCAAAUACGCAUGCUCACCCUCGAGAAGAUCAAUUUCGGAAGGGUUCAACUGCGAAAACGCUUCAGCAUGUUCCGCAAGGACAU ((((...(((((((.....((((((((......))))))))..((((.....((((((((((.......)))))..))))).....)))).....))))))))))).(((....)))... ( -41.50) >DroPer_CAF1 20997 120 + 1 CCUCAAGCUGAAGUACGACUUUGCCCUCAAACAGAGCCGAGUGCGUCUGCUCACCACCGAAGUAAUCAACUUCAAGCGCGUGCACAUCCGCAAGCGAAUUGGGAUGUUCCGCACCGACUU ......((((((((...((((((..(((.....)))..((((......)))).....)))))).....))))).)))(((.(.((((((.(((.....))))))))).))))........ ( -34.40) >consensus CCUGAAACUGAAGUAUGACUUUGCCCUCAAACAGGGGCAACUGCGCAUGCUCACCCUCGAAAAGAUCAACUUCGGAAGGGUUCAAAUGCGCAAACGCUUCAGCAUGUUCCGCAAGGACAU .........((.(((((...(((((((......))))))).....)))))))((((((((((.......)))))..)))))......(((....)))..........(((....)))... (-16.14 = -18.95 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:56 2006