Locus 4733

Sequence ID 3L_DroMel_CAF1
Location 13,321,253 – 13,321,367
Length 114
Max. P 0.681563
window7453

overview

Window 3

Location 13,321,253 – 13,321,367
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 80.06
Mean single sequence MFE -35.97
Consensus MFE -26.92
Energy contribution -26.92
Covariance contribution 0.01
Combinations/Pair 1.11
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.31
SVM RNA-class probability 0.681563
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13321253 114 - 23771897
CCAUCUGAAUGGAGUGGUGGUCUCCCCAUCUCAUUCAACUUGGGAUGCGGAUGC------GGAUGGAGAUGCCAUUACCCCCCAGGUGGGGUUAUUAACAUGUUCAGCAGAUAUGCAAAA
(((((((...((.((((((((.((.(((((((((((............))))).------)))))).)).))))))))))..))))))).................(((....))).... ( -40.10)
>DroEre_CAF1 6147 107 - 1
CCAUCUGAAUGGCGUGGUGGUCUGCC-------------UUGGGAUGCGGAUGCGGAUGCGGAUGCGGAUGCCAUUACCCCCCAGGUGGGGUUAUUAACAUGUUAAGCAGAUAUGCAAAA
..(((((..((((((((((((((((.-------------((.(.((.((....)).)).).)).))))..))))).(((((......)))))......)))))))..)))))........ ( -36.30)
>DroYak_CAF1 6038 96 - 1
CCAUCUGAAUGGAGUGGUGGUCUCCA-------------CUGCCUUGCGGAUGC-----------CGGAUGCCAUUACCCCCCAGGUGGGGUUAUUAACAUGUUAAGCAGAUAUGCAAAA
(((((((...((.((((((((.(((.-------------...((....))....-----------.))).))))))))))..))))))).................(((....))).... ( -31.50)
>consensus
CCAUCUGAAUGGAGUGGUGGUCUCCC_____________UUGGGAUGCGGAUGC______GGAUGCGGAUGCCAUUACCCCCCAGGUGGGGUUAUUAACAUGUUAAGCAGAUAUGCAAAA
(((((((...((.((((((((((((..............(((.....)))..............))))..))))))))))..))))))).................(((....))).... (-26.92 = -26.92 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:51 2006