Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,320,621 – 13,320,741 |
Length | 120 |
Max. P | 0.544441 |
Location | 13,320,621 – 13,320,741 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -31.69 |
Energy contribution | -31.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.91 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13320621 120 - 23771897 UGCACAGCUAAUGCGUUUUUAAUGAGUGCAUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCAGCAU (((...(((.((((((((.....))))))))((((((.(((......))).)))))))))(((((((((((......)))........(((((.........))))))))))))).))). ( -33.90) >DroEre_CAF1 5527 120 - 1 UGCGCAGCUAAUGCGUUUUUAAUGAGUGCCUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCGGCAU .(((((.....))))).........((((((((((((.(((......))).))))))))((((((((((((......)))........(((((.........)))))))))))))))))) ( -37.10) >DroYak_CAF1 5431 120 - 1 UGCACAGCUAAUGCGUUUUUAAUGAGUGCCUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCGGCAU .((((.((....)).((......))))))((((((((.(((......))).))))))))((((((((((((......)))........(((((.........)))))))))))))).... ( -33.20) >consensus UGCACAGCUAAUGCGUUUUUAAUGAGUGCCUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCGGCAU ((((((((....)).(((.(((((.(((....)))..))))).)))......))))))(((((((((((((......)))........(((((.........))))))))))))).)).. (-31.69 = -31.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:50 2006