| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,320,343 – 13,320,434 |
| Length | 91 |
| Max. P | 0.827916 |
| Location | 13,320,343 – 13,320,434 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -27.50 |
| Energy contribution | -27.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13320343 91 + 23771897 AACAUCCGAUGGCCACACCUGCUGUCUGCAGUUUGCAGUUUGCUGGGUGCACUUUGCUGCCUACUUUGGGGCGCCACUCAAUUAUUUAUGU .......((((((..(((((((...((((.....))))...)).))))).........((((......)))))))).))............ ( -27.50) >DroEre_CAF1 5251 91 + 1 AACAUCCGAUGGCCACACCUGCUGUCUGCAGUUUGCAGUUUGCUGGGUGCACUUUGCUGCCUACUUUGGGGCGCCACUCAAUUAUUUAUGU .......((((((..(((((((...((((.....))))...)).))))).........((((......)))))))).))............ ( -27.50) >DroYak_CAF1 5151 91 + 1 AACAUCCGAUGGCCACACCUGCUGUCUGCAGUUUGCAGUUUGCUGGGUGCACUUUGCUGCCUACUUUGGGGCGCCACUCAAUUAUUUAUGU .......((((((..(((((((...((((.....))))...)).))))).........((((......)))))))).))............ ( -27.50) >consensus AACAUCCGAUGGCCACACCUGCUGUCUGCAGUUUGCAGUUUGCUGGGUGCACUUUGCUGCCUACUUUGGGGCGCCACUCAAUUAUUUAUGU .......((((((..(((((((...((((.....))))...)).))))).........((((......)))))))).))............ (-27.50 = -27.50 + 0.00)
| Location | 13,320,343 – 13,320,434 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -26.60 |
| Energy contribution | -26.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13320343 91 - 23771897 ACAUAAAUAAUUGAGUGGCGCCCCAAAGUAGGCAGCAAAGUGCACCCAGCAAACUGCAAACUGCAGACAGCAGGUGUGGCCAUCGGAUGUU .....((((.((((.(((((((........)))........(((((..((...((((.....))))...)).))))).)))))))).)))) ( -26.60) >DroEre_CAF1 5251 91 - 1 ACAUAAAUAAUUGAGUGGCGCCCCAAAGUAGGCAGCAAAGUGCACCCAGCAAACUGCAAACUGCAGACAGCAGGUGUGGCCAUCGGAUGUU .....((((.((((.(((((((........)))........(((((..((...((((.....))))...)).))))).)))))))).)))) ( -26.60) >DroYak_CAF1 5151 91 - 1 ACAUAAAUAAUUGAGUGGCGCCCCAAAGUAGGCAGCAAAGUGCACCCAGCAAACUGCAAACUGCAGACAGCAGGUGUGGCCAUCGGAUGUU .....((((.((((.(((((((........)))........(((((..((...((((.....))))...)).))))).)))))))).)))) ( -26.60) >consensus ACAUAAAUAAUUGAGUGGCGCCCCAAAGUAGGCAGCAAAGUGCACCCAGCAAACUGCAAACUGCAGACAGCAGGUGUGGCCAUCGGAUGUU .....((((.((((.(((((((........)))........(((((..((...((((.....))))...)).))))).)))))))).)))) (-26.60 = -26.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:49 2006