Locus 4730

Sequence ID 3L_DroMel_CAF1
Location 13,320,155 – 13,320,275
Length 120
Max. P 0.871255
window7449

overview

Window 9

Location 13,320,155 – 13,320,275
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -34.37
Consensus MFE -34.28
Energy contribution -33.83
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 1.00
SVM decision value 0.87
SVM RNA-class probability 0.871255
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13320155 120 - 23771897
UAUGCGAAUGCUGUGGGCUGCAUUUACUUAAAUGGAGAAGCCGCAGGGCUAAAGCGAAUGGGCGUGGUCUUGAUUUUGGUUUUCUAUUCGCUUAAGGAUAUUGCAUUAAAUUAAGGUGAA
.((((((...((((((.((.(((((....))))).))...))))))..((.(((((((((((...(..(........)..).))))))))))).))....)))))).............. ( -34.20)
>DroEre_CAF1 5064 120 - 1
UAUGCGAAUGCUGUGGGCUGCAUUUACUUAAAUGGAGAAGCCGCAGGACUAAAGCGAAUGGGCGUGGUCUUGAUUUUGGUUUUCUAUUCGCUUAAGGAUAUUGCAUUAAAUUAAGCUGAA
.((((((...((((((.((.(((((....))))).))...))))))..((.(((((((((((...(..(........)..).))))))))))).))....)))))).............. ( -34.50)
>DroYak_CAF1 4951 120 - 1
UAUGCGAACGCUGUGGGCUGCAUUUACUUAAAUGAAGAAGCCGCAGGGCUAAAGCGAAUGGGCGUGGUCUUGAUUUUGGUUUUCUAUUCGCUUAAGGAUAUUGCAUUAAAUUAAGGUGAA
.((((((..(((.((((((.(((((....)))))....)))).)).)))..(((((((((((...(..(........)..).))))))))))).......)))))).............. ( -34.40)
>consensus
UAUGCGAAUGCUGUGGGCUGCAUUUACUUAAAUGGAGAAGCCGCAGGGCUAAAGCGAAUGGGCGUGGUCUUGAUUUUGGUUUUCUAUUCGCUUAAGGAUAUUGCAUUAAAUUAAGGUGAA
.((((((.(.((((((.((.(((((....))))).))...)))))).)((.(((((((((((...(..(........)..).))))))))))).))....)))))).............. (-34.28 = -33.83 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:47 2006