Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,316,162 – 13,316,281 |
Length | 119 |
Max. P | 0.774831 |
Location | 13,316,162 – 13,316,281 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.04 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -20.55 |
Energy contribution | -20.33 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.20 |
Structure conservation index | 0.85 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13316162 119 - 23771897 GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGUUGUCUCAACUCAACUCAACUCCUCCCGUCUCCACCAUCUAACGUCUUU (((((((((......)))))).((((..(((((....(((((......................)))))((((...)))))))))..))))......)))................... ( -27.45) >DroEre_CAF1 1381 96 - 1 GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGCUGUCUCAACC--ACUCAGCUCC---------------------UCUCC (((.((((((((...)))))...((.(((.(((..(((((((.....))))))))))...))).))..))).)))......--..........---------------------..... ( -21.40) >DroYak_CAF1 1211 92 - 1 GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGUUGUCUCCACC--AGCCAG-------------------------UCUUU ((((((.(((((...))))).......((..((...((((((......................))))))...))..))..--.).)))-------------------------))... ( -23.35) >consensus GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGUUGUCUCAACC__ACUCAGCUCC_____________________UCUUU (((.((((((((...)))))...((.(((.(((..(((((((.....))))))))))...))).))..))).)))............................................ (-20.55 = -20.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:45 2006